Files in MoisesExpositoAlonso/popgensim
Wright Fisher simulations: C++ implementation with interactive Shiny app visualization
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
MCMC.cpp
MCMC2.cpp
MCMCnap.cpp
MCMCnapdev.cpp
NAMESPACE
R/3lociLD.R
R/BMgwa.R
R/allelesim.R
R/argumentsgws.R
R/attachgenomes.R
R/get_genomematrix.R
R/gwa.R
R/ld.R
R/mcmc.R
R/multigensim.R
R/napMCMC.R
R/readgenome.R
R/run_MCMCglmm.R
README.md
Read-and-delete-me
analyses/array_simulations.R
analyses/multigensim.R
analyses/playaround.R
analyses/samplingvarianceheritability.R
apps/monoapp.R
apps/multiapp.R
bitsandpieces.cpp
clean.sh
data/Y.rds
figs/positive_selection.pdf
figs/positive_selection.png
figs/positive_selection10.png
gwa.cpp
ideasmultigenic
image1.png
image2.png
insilicoextinctionC.cpp
ld.cpp
method/.DS_Store
method/Fig1.R
method/LD_understanding.Rmd
method/Rplots.pdf
method/backups/meta copy 2.Rmd
method/backups/meta copy.Rmd
method/cGWA_mGWA.R
method/figure_fitness_distribution.R
method/figure_kondrasov.R
method/figure_variance_mean_fitness.R
method/latex.Rmd
method/latex.pdf
method/ld_empirical.R
method/logs/top_sparse0.95_additive_h1.log
method/markdowns/LD_understanding.pdf
method/markdowns/epistasis_selfer.Rmd
method/markdowns/equations_gamma_MCMC.Rmd
method/markdowns/equations_gamma_MCMC.pdf
method/markdowns/equations_ld.Rmd
method/markdowns/equations_likelihoo_afterRasmusNov8.Rmd
method/markdowns/equations_likelihood-Nov7.pdf
method/markdowns/equations_likelihood-Nov8.Rmd
method/markdowns/equations_likelihood-Nov8.pdf
method/markdowns/equations_likelihood-fitnessGamma.Rmd
method/markdowns/equations_likelihood.Rmd
method/markdowns/equations_likelihood.pdf
method/markdowns/equations_meta.Rmd
method/markdowns/ld_equations.pdf
method/markdowns/likelihood_eq.pdf
method/markdowns/maximumlikelihood.R
method/markdowns/meta_all.html
method/markdowns/meta_equations.html
method/markdowns/meta_real_data.html
method/markdowns/meta_ridge_regression.R
method/markdowns/simulations_conditional_n_ld.Rmd
method/markdowns/simulations_conditional_n_ld.pdf
method/markdowns/tables.Rmd
method/mcmccheck.R
method/mcmccheck.Rmd
method/mcmccheck.html
method/mcmccheck.pdf
method/minexample.R
method/oldcopies/simulations_architectures_mappingMCMC copy.R
method/realmcmc.R
method/runsimulation.R
method/shrunsim.sh
method/simulations_architectures_mappingMCMC.R
method/todelete/.DS_Store
method/todelete/exampleRcppNumeric.cpp
method/todelete/ld_likelihood.R
method/todelete/likelihood_fitness.R
method/todelete/logs/.DS_Store
method/todelete/logs/top_sparse0.5_additive_h1.log
method/todelete/logs/top_sparse0.5_epistatic_h1.log
method/todelete/logs/top_sparse0.9_additive_h1.log
method/todelete/logs/top_sparse0.9_epistatic_h1.log
method/todelete/meta_realLD.Rmd
method/todelete/meta_realLD.html
method/todelete/meta_realLD_window.Rmd
method/todelete/meta_realLD_window.html
method/todelete/meta_real_fitness.html
method/todelete/meta_sim.Rmd
method/todelete/meta_sim.html
method/todelete/old/gwa_all.Rmd
method/todelete/old/gwa_real_data.Rmd
method/todelete/real_gws.R
method/todelete/real_predicted_fitness.R
method/todelete/run_simulations.sh
method/todelete/sim_gws.R
method/todelete/trials.Rmd
multitools.cpp
nap.Rproj
oldbackups/MCMC.cpp
oldbackups/MCMC2.cpp
popgensim.Rproj
popgensim_0.0.0.9000.tar.gz
src/.fuse_hidden000024fd00000002
src/MCMCnap.cpp
src/allelesimC.cpp
src/cleancompile.sh
