Man pages for NOAA-EDAB/Rpath
R implementation of Ecopath with Ecosim
| AB.params | AB.params |
| adjust.fishing | Adjust Fishing Mortality |
| adjust.forcing | Adjust Forcing Parameters |
| adjust.scenario | Adjust Rsim.scenario parameters |
| check.rpath.params | Check Rpath parameter files |
| create.rpath.params | Creates a shell for the Rpath.params object |
| Ecosense.EBS | Eastern Bering Sea 1990s Ecopath model (53 biological groups... |
| Ecosense.ECS | Eastern Chukchi Sea Ecopath model (52 biological groups and 1... |
| Ecosense.GOA | Gulf of Alaska (west/central) 1990s Ecopath model (49... |
| extract.node | Extract node data |
| frate.table | Fishing Mortality Table |
| get.rsim.fishing | Retrieve Rsim fishing forcing parameters |
| get.rsim.forcing | Retrieve Rsim forcing parameters |
| get.rsim.params | Retrieve Rsim scenario parameters |
| get.rsim.stanzas | Retrieve Rsim stanza parameters |
| get.rsim.start_state | Retrieve Rsim starting state values |
| MTI | Mixed Trophic Impacts |
| read.rpath.params | Read Rpath parameters from .csv files |
| REco.params | REco.params |
| rpath | Ecopath module of Rpath |
| rpath.groups | Rpath functional group names |
| Rpath-package | Rpath: A package implementing mass balance algorithms... |
| rpath.stanzas | Calculate biomass and consumption for multistanza groups |
| rsim.deriv | Calculate the derivatives for a time step |
| rsim.diet | Output consumption by a group |
| rsim.fishing | Generate Rsim fishing matrix |
| rsim.forcing | Generate Rsim forcing matrix |
| rsim.mort | Output mortality on a group |
| rsim.params | Initial set up for Rsim module of Rpath |
| rsim.plot | Plot routine for Rsim runs |
| rsim.run | Run Rsim |
| rsim.scenario | Rsim module of 'Rpath' |
| rsim.sense | Ecosense function for rpath (rsim.sense) |
| rsim.sense.path | Ecosense function for rpath (rsim.sense.path) |
| rsim.stanzas | Generate Rsim stanza matrix |
| rsim.state | Generate Rsim state matrix |
| rsim.step | Function to add a time step to an Rsim run |
| set.rsim.scene | Set Rsim.scenario parameters |
| stanzaplot | Plot routine for Ecopath multistanzas |
| webplot | Plot routine for Ecopath food web |
| write.Rpath | Write function for Ecopath object |
| write.rpath.params | Write Rpath parameters to .csv files |
| write.Rsim | Write function for Ecosim object |
