NOAA-EDAB/RpathQNM
What the Package Does (One Line, Title Case)

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What the Package Does (One Line, Title Case)

.Rbuildignore
.gitignore
Core_sp_fig.R
DESCRIPTION
Full model.png
Full-model-no-diag.pdf
Full-model-no-diag.tiff
LICENSE
NAMESPACE
R/Comparison_plot.R R/WSS28_perturbations.R R/WSS28_results.r R/WSS28_sense.R R/WSS_sense.R R/learnQpress.R R/table_for_comparing.R R/table_for_plotting.R README.md
RpathQNM.Rproj
Smallest model.png
Smallest-model-no-diag.pdf
Smallest-model-no-diag.tiff
WSS28model/DC.data.RData
WSS28model/DC.data.noscallop.RData
WSS28model/Dia plots/Dia2CircularPlots.R WSS28model/Dia plots/Dia2CiruclarTiff.R
WSS28model/Dia plots/SarahWSS1.dia
WSS28model/Dia plots/WSS0.jpeg
WSS28model/Dia plots/WSS1.dia
WSS28model/Dia plots/WSS10.jpeg
WSS28model/Dia plots/WSS2.dia
WSS28model/Dia plots/WSS20.jpeg
WSS28model/Dia plots/WSS3.dia
WSS28model/Dia plots/WSS30.jpeg
WSS28model/Dia plots/WSS4.dia
WSS28model/Dia plots/WSS40.jpeg
WSS28model/Dia plots/WSS5.dia
WSS28model/Dia plots/WSS50.jpeg
WSS28model/Dia plots/WSS6.dia
WSS28model/QNM plots/WSS28 plots 1 Phytoplankton_minus .pdf WSS28model/QNM plots/WSS28 plots 1 Phytoplankton_up .pdf WSS28model/QNM plots/WSS28 plots 1 Seals_up .pdf WSS28model/QNM plots/WSS28 plots 1 Small pelagics_minus .pdf WSS28model/QNM plots/WSS28 plots 1 Small pelagics_up .pdf WSS28model/QNM plots/WSS28 plots 2 Phytoplankton_minus .pdf WSS28model/QNM plots/WSS28 plots 2 Phytoplankton_up .pdf WSS28model/QNM plots/WSS28 plots 2 Seals_up .pdf WSS28model/QNM plots/WSS28 plots 2 Small pelagics_minus .pdf WSS28model/QNM plots/WSS28 plots 2 Small pelagics_up .pdf WSS28model/QNM plots/WSS28 plots 3 Phytoplankton_minus .pdf WSS28model/QNM plots/WSS28 plots 3 Phytoplankton_up .pdf WSS28model/QNM plots/WSS28 plots 3 Seals_up .pdf WSS28model/QNM plots/WSS28 plots 3 Small pelagics_minus .pdf WSS28model/QNM plots/WSS28 plots 3 Small pelagics_up .pdf WSS28model/QNM plots/WSS28 plots 4 Phytoplankton_minus .pdf WSS28model/QNM plots/WSS28 plots 4 Phytoplankton_up .pdf WSS28model/QNM plots/WSS28 plots 4 Small pelagics_minus .pdf WSS28model/QNM plots/WSS28 plots 4 Small pelagics_up .pdf WSS28model/QNM plots/WSS28 plots 5 Phytoplankton_minus .pdf WSS28model/QNM plots/WSS28 plots 5 Phytoplankton_up .pdf WSS28model/QNM plots/WSS28 plots 5 Small pelagics_minus .pdf WSS28model/QNM plots/WSS28 plots 5 Small pelagics_up .pdf WSS28model/QNM plots/WSS28 plots 6 Phytoplankton_minus .pdf WSS28model/QNM plots/WSS28 plots 6 Phytoplankton_up .pdf WSS28model/QNM plots/WSS28 plots 6 Small pelagics_minus .pdf WSS28model/QNM plots/WSS28 plots 6 Small pelagics_up .pdf WSS28model/RpathQNM_WSS28.Rmd
WSS28model/RpathQNM_combined_plots_neut_mix.jpeg
WSS28model/RpathQNM_combined_plots_neut_mix_reordered.jpeg
WSS28model/RpathQNM_combined_plots_neut_mix_reordered_reum.jpeg
WSS28model/RpathQNM_combined_plots_neut_mix_reordered_reumcode.jpeg
WSS28model/RpathQNM_combined_plots_wfishery_thirds.jpeg
WSS28model/WSS28_QNM_results/WSS28_QNM_results_compiled.RDS
WSS28model/WSS28_QNM_results/WSS28_QNM_results_compiled_tr.RDS
WSS28model/WSS28_QNM_results/WSS28results1Fishery_down.RData
WSS28model/WSS28_QNM_results/WSS28results1Fishery_down.csv
WSS28model/WSS28_QNM_results/WSS28results1Fishery_up.RData
WSS28model/WSS28_QNM_results/WSS28results1Fishery_up.csv
WSS28model/WSS28_QNM_results/WSS28results1Phytoplankton_down.RData
WSS28model/WSS28_QNM_results/WSS28results1Phytoplankton_down.csv
WSS28model/WSS28_QNM_results/WSS28results1Phytoplankton_dtesting.RData
WSS28model/WSS28_QNM_results/WSS28results1Phytoplankton_up.RData
WSS28model/WSS28_QNM_results/WSS28results1Phytoplankton_up.csv
WSS28model/WSS28_QNM_results/WSS28results1Seals_down.RData
WSS28model/WSS28_QNM_results/WSS28results1Seals_down.csv
WSS28model/WSS28_QNM_results/WSS28results1Seals_up.RData
WSS28model/WSS28_QNM_results/WSS28results1Seals_up.csv
WSS28model/WSS28_QNM_results/WSS28results1Small pelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results1Small pelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results1Spelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results1Spelagics_down.csv
WSS28model/WSS28_QNM_results/WSS28results1Spelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results1Spelagics_up.csv
WSS28model/WSS28_QNM_results/WSS28results2Fishery_down.RData
WSS28model/WSS28_QNM_results/WSS28results2Fishery_down.csv
WSS28model/WSS28_QNM_results/WSS28results2Fishery_up.RData
WSS28model/WSS28_QNM_results/WSS28results2Fishery_up.csv
WSS28model/WSS28_QNM_results/WSS28results2Phytoplankton_down.RData
WSS28model/WSS28_QNM_results/WSS28results2Phytoplankton_down.csv
WSS28model/WSS28_QNM_results/WSS28results2Phytoplankton_dtesting.RData
WSS28model/WSS28_QNM_results/WSS28results2Phytoplankton_up.RData
WSS28model/WSS28_QNM_results/WSS28results2Phytoplankton_up.csv
WSS28model/WSS28_QNM_results/WSS28results2Seals_down.RData
WSS28model/WSS28_QNM_results/WSS28results2Seals_down.csv
WSS28model/WSS28_QNM_results/WSS28results2Seals_up.RData
WSS28model/WSS28_QNM_results/WSS28results2Seals_up.csv
WSS28model/WSS28_QNM_results/WSS28results2Small pelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results2Small pelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results2Spelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results2Spelagics_down.csv
WSS28model/WSS28_QNM_results/WSS28results2Spelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results2Spelagics_up.csv
WSS28model/WSS28_QNM_results/WSS28results3Fishery_down.RData
WSS28model/WSS28_QNM_results/WSS28results3Fishery_down.csv
WSS28model/WSS28_QNM_results/WSS28results3Fishery_up.RData
WSS28model/WSS28_QNM_results/WSS28results3Fishery_up.csv
WSS28model/WSS28_QNM_results/WSS28results3Phytoplankton_down.RData
WSS28model/WSS28_QNM_results/WSS28results3Phytoplankton_down.csv
WSS28model/WSS28_QNM_results/WSS28results3Phytoplankton_dtesting.RData
WSS28model/WSS28_QNM_results/WSS28results3Phytoplankton_up.RData
WSS28model/WSS28_QNM_results/WSS28results3Phytoplankton_up.csv
WSS28model/WSS28_QNM_results/WSS28results3Seals_down.RData
WSS28model/WSS28_QNM_results/WSS28results3Seals_down.csv
WSS28model/WSS28_QNM_results/WSS28results3Seals_up.RData
WSS28model/WSS28_QNM_results/WSS28results3Seals_up.csv
WSS28model/WSS28_QNM_results/WSS28results3Small pelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results3Small pelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results3Spelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results3Spelagics_down.csv
WSS28model/WSS28_QNM_results/WSS28results3Spelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results3Spelagics_up.csv
WSS28model/WSS28_QNM_results/WSS28results4Fishery_down.RData
WSS28model/WSS28_QNM_results/WSS28results4Fishery_down.csv
WSS28model/WSS28_QNM_results/WSS28results4Fishery_up.RData
WSS28model/WSS28_QNM_results/WSS28results4Fishery_up.csv
WSS28model/WSS28_QNM_results/WSS28results4Phytoplankton_down.RData
WSS28model/WSS28_QNM_results/WSS28results4Phytoplankton_down.csv
WSS28model/WSS28_QNM_results/WSS28results4Phytoplankton_dtesting.RData
WSS28model/WSS28_QNM_results/WSS28results4Phytoplankton_up.RData
WSS28model/WSS28_QNM_results/WSS28results4Phytoplankton_up.csv
WSS28model/WSS28_QNM_results/WSS28results4Seals_down.RData
WSS28model/WSS28_QNM_results/WSS28results4Seals_down.csv
WSS28model/WSS28_QNM_results/WSS28results4Seals_up.RData
WSS28model/WSS28_QNM_results/WSS28results4Seals_up.csv
WSS28model/WSS28_QNM_results/WSS28results4Small pelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results4Small pelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results4Spelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results4Spelagics_down.csv
WSS28model/WSS28_QNM_results/WSS28results4Spelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results4Spelagics_up.csv
WSS28model/WSS28_QNM_results/WSS28results5Fishery_down.RData
WSS28model/WSS28_QNM_results/WSS28results5Fishery_down.csv
WSS28model/WSS28_QNM_results/WSS28results5Fishery_up.RData
WSS28model/WSS28_QNM_results/WSS28results5Fishery_up.csv
WSS28model/WSS28_QNM_results/WSS28results5Phytoplankton_down.RData
WSS28model/WSS28_QNM_results/WSS28results5Phytoplankton_down.csv
WSS28model/WSS28_QNM_results/WSS28results5Phytoplankton_dtesting.RData
WSS28model/WSS28_QNM_results/WSS28results5Phytoplankton_up.RData
WSS28model/WSS28_QNM_results/WSS28results5Phytoplankton_up.csv
WSS28model/WSS28_QNM_results/WSS28results5Seals_down.RData
WSS28model/WSS28_QNM_results/WSS28results5Seals_down.csv
WSS28model/WSS28_QNM_results/WSS28results5Seals_up.RData
WSS28model/WSS28_QNM_results/WSS28results5Seals_up.csv
WSS28model/WSS28_QNM_results/WSS28results5Small pelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results5Spelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results5Spelagics_down.csv
WSS28model/WSS28_QNM_results/WSS28results5Spelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results5Spelagics_up.csv
WSS28model/WSS28_QNM_results/WSS28results6Fishery_down.RData
WSS28model/WSS28_QNM_results/WSS28results6Fishery_down.csv
WSS28model/WSS28_QNM_results/WSS28results6Fishery_up.RData
WSS28model/WSS28_QNM_results/WSS28results6Fishery_up.csv
WSS28model/WSS28_QNM_results/WSS28results6Phytoplankton_down.RData
WSS28model/WSS28_QNM_results/WSS28results6Phytoplankton_down.csv
WSS28model/WSS28_QNM_results/WSS28results6Phytoplankton_dtesting.RData
WSS28model/WSS28_QNM_results/WSS28results6Phytoplankton_up.RData
WSS28model/WSS28_QNM_results/WSS28results6Phytoplankton_up.csv
WSS28model/WSS28_QNM_results/WSS28results6Seals_down.RData
WSS28model/WSS28_QNM_results/WSS28results6Seals_down.csv
WSS28model/WSS28_QNM_results/WSS28results6Seals_up.RData
WSS28model/WSS28_QNM_results/WSS28results6Seals_up.csv
WSS28model/WSS28_QNM_results/WSS28results6Small pelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results6Small pelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results6Spelagics_down.RData
WSS28model/WSS28_QNM_results/WSS28results6Spelagics_down.csv
WSS28model/WSS28_QNM_results/WSS28results6Spelagics_up.RData
WSS28model/WSS28_QNM_results/WSS28results6Spelagics_up.csv
WSS28model/WSS28_rpath no scallop.R
WSS28model/WSS28qnm10.RData
WSS28model/WSS28qnm100.RData
WSS28model/WSS28qnm20.RData
WSS28model/WSS28qnm30.RData
WSS28model/WSS28qnm40.RData
WSS28model/WSS28qnm50.RData
WSS28model/WSS28results1Phytoplankton_dtesting.RData
WSS28model/alldegrees_rpathQNM.RData
WSS28model/data neutrals/WSS28results_neu1Fishery_down.RData
WSS28model/data neutrals/WSS28results_neu1Fishery_down.csv
WSS28model/data neutrals/WSS28results_neu1Fishery_up.RData
WSS28model/data neutrals/WSS28results_neu1Fishery_up.csv
WSS28model/data neutrals/WSS28results_neu1Phytoplankton_down.RData
WSS28model/data neutrals/WSS28results_neu1Phytoplankton_down.csv
WSS28model/data neutrals/WSS28results_neu1Phytoplankton_up.RData
WSS28model/data neutrals/WSS28results_neu1Phytoplankton_up.csv
WSS28model/data neutrals/WSS28results_neu1Seals_down.RData
WSS28model/data neutrals/WSS28results_neu1Seals_down.csv
WSS28model/data neutrals/WSS28results_neu1Seals_up.RData
WSS28model/data neutrals/WSS28results_neu1Seals_up.csv
WSS28model/data neutrals/WSS28results_neu1Spelagics_down.RData
WSS28model/data neutrals/WSS28results_neu1Spelagics_down.csv
WSS28model/data neutrals/WSS28results_neu1Spelagics_up.RData
WSS28model/data neutrals/WSS28results_neu1Spelagics_up.csv
WSS28model/data neutrals/WSS28results_neu2Fishery_down.RData
WSS28model/data neutrals/WSS28results_neu2Fishery_down.csv
WSS28model/data neutrals/WSS28results_neu2Fishery_up.RData
WSS28model/data neutrals/WSS28results_neu2Fishery_up.csv
WSS28model/data neutrals/WSS28results_neu2Phytoplankton_down.RData
WSS28model/data neutrals/WSS28results_neu2Phytoplankton_down.csv
WSS28model/data neutrals/WSS28results_neu2Phytoplankton_up.RData
WSS28model/data neutrals/WSS28results_neu2Phytoplankton_up.csv
WSS28model/data neutrals/WSS28results_neu2Seals_down.RData
WSS28model/data neutrals/WSS28results_neu2Seals_down.csv
WSS28model/data neutrals/WSS28results_neu2Seals_up.RData
WSS28model/data neutrals/WSS28results_neu2Seals_up.csv
WSS28model/data neutrals/WSS28results_neu2Spelagics_down.RData
WSS28model/data neutrals/WSS28results_neu2Spelagics_down.csv
WSS28model/data neutrals/WSS28results_neu2Spelagics_up.RData
WSS28model/data neutrals/WSS28results_neu2Spelagics_up.csv
WSS28model/data neutrals/WSS28results_neu3Fishery_down.RData
WSS28model/data neutrals/WSS28results_neu3Fishery_down.csv
WSS28model/data neutrals/WSS28results_neu3Fishery_up.RData
WSS28model/data neutrals/WSS28results_neu3Fishery_up.csv
WSS28model/data neutrals/WSS28results_neu3Phytoplankton_down.RData
WSS28model/data neutrals/WSS28results_neu3Phytoplankton_down.csv
WSS28model/data neutrals/WSS28results_neu3Phytoplankton_up.RData
WSS28model/data neutrals/WSS28results_neu3Phytoplankton_up.csv
WSS28model/data neutrals/WSS28results_neu3Seals_down.RData
WSS28model/data neutrals/WSS28results_neu3Seals_down.csv
WSS28model/data neutrals/WSS28results_neu3Seals_up.RData
WSS28model/data neutrals/WSS28results_neu3Seals_up.csv
WSS28model/data neutrals/WSS28results_neu3Spelagics_down.RData
WSS28model/data neutrals/WSS28results_neu3Spelagics_down.csv
WSS28model/data neutrals/WSS28results_neu3Spelagics_up.RData
WSS28model/data neutrals/WSS28results_neu3Spelagics_up.csv
WSS28model/data neutrals/WSS28results_neu4Fishery_down.RData
WSS28model/data neutrals/WSS28results_neu4Fishery_down.csv
WSS28model/data neutrals/WSS28results_neu4Fishery_up.RData
WSS28model/data neutrals/WSS28results_neu4Fishery_up.csv
WSS28model/data neutrals/WSS28results_neu4Phytoplankton_down.RData
WSS28model/data neutrals/WSS28results_neu4Phytoplankton_down.csv
WSS28model/data neutrals/WSS28results_neu4Phytoplankton_up.RData
WSS28model/data neutrals/WSS28results_neu4Phytoplankton_up.csv
WSS28model/data neutrals/WSS28results_neu4Seals_down.RData
WSS28model/data neutrals/WSS28results_neu4Seals_down.csv
WSS28model/data neutrals/WSS28results_neu4Seals_up.RData
WSS28model/data neutrals/WSS28results_neu4Seals_up.csv
WSS28model/data neutrals/WSS28results_neu4Spelagics_down.RData
WSS28model/data neutrals/WSS28results_neu4Spelagics_down.csv
WSS28model/data neutrals/WSS28results_neu4Spelagics_up.RData
WSS28model/data neutrals/WSS28results_neu4Spelagics_up.csv
WSS28model/data neutrals/WSS28results_neu5Fishery_down.RData
WSS28model/data neutrals/WSS28results_neu5Fishery_down.csv
WSS28model/data neutrals/WSS28results_neu5Fishery_up.RData
WSS28model/data neutrals/WSS28results_neu5Fishery_up.csv
WSS28model/data neutrals/WSS28results_neu5Phytoplankton_down.RData
WSS28model/data neutrals/WSS28results_neu5Phytoplankton_down.csv
WSS28model/data neutrals/WSS28results_neu5Phytoplankton_up.RData
WSS28model/data neutrals/WSS28results_neu5Phytoplankton_up.csv
WSS28model/data neutrals/WSS28results_neu5Seals_down.RData
WSS28model/data neutrals/WSS28results_neu5Seals_down.csv
WSS28model/data neutrals/WSS28results_neu5Seals_up.RData
WSS28model/data neutrals/WSS28results_neu5Seals_up.csv
WSS28model/data neutrals/WSS28results_neu5Spelagics_down.RData
WSS28model/data neutrals/WSS28results_neu5Spelagics_down.csv
WSS28model/data neutrals/WSS28results_neu5Spelagics_up.RData
WSS28model/data neutrals/WSS28results_neu5Spelagics_up.csv
WSS28model/data neutrals/WSS28results_neu6Fishery_down.RData
WSS28model/data neutrals/WSS28results_neu6Fishery_down.csv
WSS28model/data neutrals/WSS28results_neu6Fishery_up.RData
WSS28model/data neutrals/WSS28results_neu6Fishery_up.csv
WSS28model/data neutrals/WSS28results_neu6Phytoplankton_down.RData
WSS28model/data neutrals/WSS28results_neu6Phytoplankton_down.csv
WSS28model/data neutrals/WSS28results_neu6Phytoplankton_up.RData
WSS28model/data neutrals/WSS28results_neu6Phytoplankton_up.csv
WSS28model/data neutrals/WSS28results_neu6Seals_down.RData
WSS28model/data neutrals/WSS28results_neu6Seals_down.csv
WSS28model/data neutrals/WSS28results_neu6Seals_up.RData
WSS28model/data neutrals/WSS28results_neu6Seals_up.csv
WSS28model/data neutrals/WSS28results_neu6Spelagics_down.RData
WSS28model/data neutrals/WSS28results_neu6Spelagics_down.csv
WSS28model/data neutrals/WSS28results_neu6Spelagics_up.RData
WSS28model/data neutrals/WSS28results_neu6Spelagics_up.csv
WSS28model/in_out_degree.csv
WSS28model/looping qpress Rpath WSS28.R
WSS28qnm10.dia
core_species.csv
data-raw/4X_Pedigree.xlsx
data-raw/DC.data.noscallop.RData
data-raw/Pedigree_Agg.csv
data-raw/Pedigree_Full.csv
data-raw/WSS and BOF 11-Diet composition.csv
data-raw/WSS.R data-raw/WSS_aggregated.R data-raw/WSS_collapsed.R
data/WSS.params.rda
data/WSS.rda
data/WSS28.params.rda
data/WSS28.rda
data/WSS28.results.rda
data/WSS28.sense.rda
data/WSS28_results_ecosQNM.RDS
data/WSS28_results_ecosQNM_wfishery.RDS
data/agg.table.rda
data/all.results.rda
ecoQNM_fisheryminus.pdf ecoQNM_fisheryplus.pdf ecoQNM_phytominus.pdf ecoQNM_phytoplus.pdf ecoQNM_sealminus.pdf ecoQNM_sealplus.pdf ecoQNM_spelagicsminus.pdf ecoQNM_spelagicsplus.pdf
output/Comparison.png
output/Fishery_Minus_ecosense.png
output/Fishery_Plus_ecosense.png
output/Phytoplankton_Minus_ecosense.png
output/Phytoplankton_Plus_ecosense.png
output/Seals_Minus_ecosense.png
output/Seals_Plus_ecosense.png
output/Small pelagics_Minus_ecosense.png
output/Small pelagics_Plus_ecosense.png
NOAA-EDAB/RpathQNM documentation built on June 13, 2025, 3:02 a.m.

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