Files in NOAA-EDAB/mshydradata
Manipulate input data for the hydra multispecies model
.Rbuildignore
.github/workflows/R-CMD-check.yml
.github/workflows/pkgdown.yml
.github/workflows/secretScan.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/create_datpin_files.R
R/create_documentation.R
R/hydraData.R
R/hydraDataList.R
R/hydraDataList_CIE.R
R/main_plot_inputs.R
R/plot_data_inputs.R
R/set_hcr.R
R/setup_default_inputs.R
README.md
data-raw/B0.csv
data-raw/assessmentThresholds.csv
data-raw/assessmentThresholdsSpecies.csv
data-raw/create_RData.R
data-raw/create_RData_CIE.R
data-raw/fecundity_Theta.csv
data-raw/fecundity_species.csv
data-raw/fishing_discards.csv
data-raw/fishing_discardsSurvival.csv
data-raw/fishing_error.csv
data-raw/fishing_q.csv
data-raw/fishing_q_CIE.csv
data-raw/fishing_q_indicator.csv
data-raw/fishing_selectivityc.csv
data-raw/fishing_selectivityd.csv
data-raw/foodweb.csv
data-raw/growth_covariateEffects.csv
data-raw/growth_covariates.csv
data-raw/growth_species.csv
data-raw/intake_species.csv
data-raw/intake_stomachContent.csv
data-raw/length_sizebins.csv
data-raw/lengthweight_species.csv
data-raw/maturity_covariateEffects.csv
data-raw/maturity_covariates.csv
data-raw/maturity_species.csv
data-raw/mortality_M1.csv
data-raw/mortality_M2sizePreference.csv
data-raw/observation_Y1N.csv
data-raw/observation_biomass.csv
data-raw/observation_catch.csv
data-raw/observation_effort.csv
data-raw/observation_effortSarah.csv
data-raw/observation_effortScaling.csv
data-raw/observation_error.csv
data-raw/observation_temperature.csv
data-raw/recruitment_covariateEffects.csv
data-raw/recruitment_covariates.csv
data-raw/recruitment_species.csv
data-raw/recruitment_species_CIE.csv
data-raw/redundantAvgRecPinData.csv
data-raw/redundantRecDevsPindata.csv
data-raw/sexratio.csv
data-raw/singletons.csv
data-raw/singletons_CIE.csv
data-raw/speciesList.csv
data-raw/survey_info.csv
data/hydraDataList.rda
data/hydraDataList_CIE.rda
inst/rmd/create_documentation.Rmd
inst/rmd/figures/EPUs.jpg
inst/rmd/references.bib
inst/rmd/speciesjpgs/atlanticHerring.jpg
inst/rmd/speciesjpgs/atlanticMackerel.jpg
inst/rmd/speciesjpgs/cod.jpg
inst/rmd/speciesjpgs/haddock.jpg
inst/rmd/speciesjpgs/monkfish.jpg
inst/rmd/speciesjpgs/silverHake.jpg
inst/rmd/speciesjpgs/spinyDogfish.jpg
inst/rmd/speciesjpgs/winterFlounder.jpg
inst/rmd/speciesjpgs/winterSkate.jpg
inst/rmd/speciesjpgs/yellowtailFlounder.jpg
inst/rmd/speciesthumbs/atlanticHerring.jpg
inst/rmd/speciesthumbs/atlanticMackerel.jpg
inst/rmd/speciesthumbs/cod.jpg
inst/rmd/speciesthumbs/haddock.jpg
inst/rmd/speciesthumbs/monkfish.jpg
inst/rmd/speciesthumbs/silverHake.jpg
inst/rmd/speciesthumbs/spinyDogfish.jpg
inst/rmd/speciesthumbs/winterFlounder.jpg
inst/rmd/speciesthumbs/winterSkate.jpg
inst/rmd/speciesthumbs/yellowtailFlounder.jpg
man/create_datpin_files.Rd
man/create_documentation.Rd
man/hydraData.Rd
man/hydraDataList.Rd
man/set_hcr.Rd
man/setup_default_inputs.Rd
tests/testthat.R
vignettes/user_guide.R
vignettes/user_guide.Rmd
