DEVOLUTION | Function creating the eventmatrix |
distribution | Creating a distribution-plot. |
load_matrix | Load a Matrix |
make_pie | Creating pies. |
ml_tree | Maximum Likelihood |
ML_treeplot | Visualising the ML-tree. |
mp_tree | Maximum parsimony |
MP_treeplot | Visualising the MP-tree. |
ov_input | Overview -> Segment file |
phydatevent | Transform the file into phyDat format. |
pie_it | Adding the pies. |
simplify_matrix | Simplifying the input dataset. Useful for WGS and WES data. |
splitdata | Splitting the input file. |
stem | Adding a stem to the data. |
subclones | Making new subclones. |
tree_heatmap | Making a heatmap. |
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