API for NickWilliamsSanger/rsimpop
Simulates Cellular Evolution using a Continous Time Birth Death Model
| Global functions | |
|---|---|
| .onLoad | Source code |
| .onUnload | Source code |
| C_subsample_pop | Man page Source code |
| addCellCompartment | Man page Source code |
| addDifferentiationEvents | Man page Source code |
| addDriverEvent | Man page Source code |
| add_annotation | Source code |
| add_defaults | Source code |
| add_descendent_counts_to_tree | Man page Source code |
| add_driver | Source code |
| annotate_tree_with_pop_coalescences | Source code |
| combine_simpops | Man page Source code |
| continue_driver_process_sim | Man page Source code |
| convert_annualS_to_s | Man page Source code |
| elbow | Source code |
| elbowv | Source code |
| getDefaultConfig | Man page Source code |
| get_all_node_children | Man page Source code |
| get_edge_info | Man page Source code |
| get_elapsed_time_tree | Man page Source code |
| get_height | Source code |
| get_idx_for_node | Source code |
| get_nb | Source code |
| get_node_children | Man page Source code |
| get_parents | Source code |
| get_samples_in_clade | Man page Source code |
| get_subsampled_tree | Man page |
| get_tree_from_simpop | Man page |
| get_tree_overlap | Source code |
| get_x_range | Source code |
| get_y_range | Source code |
| initSimPop | Man page Source code |
| make_star_tree | Source code |
| node_labels | Man page Source code |
| plot.simpop | Man page Source code |
| plot_tree | Man page Source code |
| plot_tree_events | Man page |
| plot_tree_overlaps | Source code |
| recalculateFitnessV2 | Source code |
| run_2compartment_model | Source code |
| run_driver_process_sim | Man page Source code |
| run_neutral_sim | Man page Source code |
| run_neutral_trajectory | Man page Source code |
| run_selection_sim | Man page Source code |
| run_transient_selection | Man page Source code |
| set_cedge | Source code |
| set_height | Source code |
| set_tree_coords | Source code |
| sim_pop | Man page Source code |
| simple_continuous_selection | Source code |
| standardiseTree | Source code |
