Files in NickWilliamsSanger/rsimpop
Simulates Cellular Evolution using a Continous Time Birth Death Model
CHANGES.md
NickWilliamsSanger/rsimpop documentation built on Sept. 6, 2024, 12:42 a.m.
DESCRIPTION
LICENSE.md
NAMESPACE
R/plot_tree_annots.R
R/plot_tree_simpop.R
R/sim_pop.R
R/wrapped_sims.R
R/zzz.R
README.Rmd
README.md
man/C_subsample_pop.Rd
man/addCellCompartment.Rd
man/addDifferentiationEvents.Rd
man/addDriverEvent.Rd
man/add_descendent_counts_to_tree.Rd
man/combine_simpops.Rd
man/continue_driver_process_sim.Rd
man/convert_annualS_to_s.Rd
man/figures/README-events-1.png
man/figures/README-mutacq-1.png
man/figures/README-neutwithtraj-1.png
man/figures/README-neutwithtraj-2.png
man/figures/README-plotc2-1.png
man/figures/README-plotcompartment-1.png
man/figures/README-selectiont-1.png
man/figures/README-seltree-1.png
man/figures/README-seltree-2.png
man/figures/README-seltree-3.png
man/figures/README-seltree-4.png
man/figures/README-simagain-1.png
man/figures/README-simagain-2.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-5-2.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-zygote-1.png
man/figures/README-zygote-2.png
man/getDefaultConfig.Rd
man/get_all_node_children.Rd
man/get_edge_info.Rd
man/get_elapsed_time_tree.Rd
man/get_node_children.Rd
man/get_samples_in_clade.Rd
man/get_subsampled_tree.Rd
man/get_tree_from_simpop.Rd
man/initSimPop.Rd
man/node_labels.Rd
man/plot.simpop.Rd
man/plot_tree.Rd
man/plot_tree_events.Rd
man/run_driver_process_sim.Rd
man/run_neutral_sim.Rd
man/run_neutral_trajectory.Rd
man/run_selection_sim.Rd
man/run_transient_selection.Rd
man/sim_pop.Rd
src/CellCompartment.cpp
src/CellCompartment.h
src/CellSimulation.cpp
src/CellSimulation.h
src/Event.h
src/PhyloNode.cpp
src/PhyloNode.h
src/RandomNumberGenerator.cpp
src/RandomNumberGenerator.h
src/build.sh
src/rsimpop.cpp
src/utils.h
vignettes/rsimpop.Rmd
