Files in OHDSI/Capr
Cohort Definition Application Programming
.Rbuildignore
.github/workflows/R_CMD_check_Hades.yaml
.github/workflows/R_CMD_check_main_weekly.yaml
.github/workflows/nightly_cleanup_Hades.yml
.gitignore
CRAN-SUBMISSION
Capr.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/Capr.R
R/attributes-concept.R
R/attributes-dateAdjustment.R
R/attributes-logic.R
R/attributes-nested.R
R/attributes-op.R
R/cohort.R
R/collectCodesetId.R
R/conceptSet.R
R/criteria.R
R/exit.R
R/query.R
R/window.R
README.md
_pkgdown.yml
compare_versions
cran-comments.md
deploy.sh
docs/404.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Capr-conceptSets.html
docs/articles/Examples.html
docs/articles/Using-Capr.html
docs/articles/capr_design.html
docs/articles/capr_objects.html
docs/articles/capr_templates.html
docs/articles/images/aperture1.png
docs/articles/images/aperture2.png
docs/articles/images/aperture3.png
docs/articles/images/aperture4.png
docs/articles/images/criteria_example.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Capr-package.html
docs/reference/CensoringCriteria-class.html
docs/reference/Concept-class.html
docs/reference/ConceptSet-class.html
docs/reference/ConceptSetItem-class.html
docs/reference/Criteria-class.html
docs/reference/DrugExposureExit-class.html
docs/reference/Endpoint-class.html
docs/reference/EventAperture-class.html
docs/reference/EventWindow-class.html
docs/reference/FixedDurationExit-class.html
docs/reference/Group-class.html
docs/reference/ObservationExit-class.html
docs/reference/ObservationWindow-class.html
docs/reference/Occurrence-class.html
docs/reference/Query-class.html
docs/reference/Rplot001.png
docs/reference/age.html
docs/reference/as.data.frame-ConceptSet-method.html
docs/reference/as.json.html
docs/reference/atLeast.html
docs/reference/atMost.html
docs/reference/attributes.html
docs/reference/attrition.html
docs/reference/bt.html
docs/reference/censoringEvents.html
docs/reference/cohort.html
docs/reference/compile-methods.html
docs/reference/compile.html
docs/reference/conceptAttribute-class.html
docs/reference/conditionEra.html
docs/reference/conditionOccurrence.html
docs/reference/conditionType.html
docs/reference/continuousObservation.html
docs/reference/cs.html
docs/reference/dateAdjustment.html
docs/reference/dateAdjustmentAttribute-class.html
docs/reference/daysOfSupply.html
docs/reference/death.html
docs/reference/deviceExposure.html
docs/reference/drugEra.html
docs/reference/drugExit.html
docs/reference/drugExposure.html
docs/reference/drugQuantity.html
docs/reference/drugRefills.html
docs/reference/drugType.html
docs/reference/duringInterval.html
docs/reference/endDate.html
docs/reference/entry.html
docs/reference/eq.html
docs/reference/equals-methods.html
docs/reference/era.html
docs/reference/eventEnds.html
docs/reference/eventStarts.html
docs/reference/exactly.html
docs/reference/exit.html
docs/reference/figures/logo.png
docs/reference/firstOccurrence.html
docs/reference/fixedExit.html
docs/reference/generateCaprTemplate.html
docs/reference/getConceptSetCall.html
docs/reference/getConceptSetDetails.html
docs/reference/gt.html
docs/reference/gte.html
docs/reference/index.html
docs/reference/logicAttribute-class.html
docs/reference/lt.html
docs/reference/lte.html
docs/reference/makeCohortSet.html
docs/reference/measurement.html
docs/reference/measurementType.html
docs/reference/nbt.html
docs/reference/nestedAttribute-class.html
docs/reference/nestedWithAll.html
docs/reference/nestedWithAny.html
docs/reference/nestedWithAtLeast.html
docs/reference/nestedWithAtMost.html
docs/reference/observation.html
docs/reference/observationExit.html
docs/reference/observationType.html
docs/reference/opAttributeDate-class.html
docs/reference/opAttributeInteger-class.html
docs/reference/opAttributeNumeric-class.html
docs/reference/opAttributeSuper-class.html
docs/reference/pipe.html
docs/reference/procedure.html
docs/reference/procedureType.html
docs/reference/rangeHigh.html
docs/reference/rangeLow.html
docs/reference/readConceptSet.html
docs/reference/startDate.html
docs/reference/toCirce.html
docs/reference/unit.html
docs/reference/valueAsNumber.html
docs/reference/visit.html
docs/reference/visitType.html
docs/reference/withAll.html
docs/reference/withAny.html
docs/reference/withAtLeast.html
docs/reference/withAtMost.html
docs/reference/writeCohort.html
docs/reference/writeConceptSet.html
docs/sitemap.xml
extras/Capr.pdf
extras/PackageMaintenance.R
extras/pdf_vignette/Capr-conceptSets.pdf
extras/pdf_vignette/Examples.pdf
extras/pdf_vignette/Using-Capr.pdf
extras/pdf_vignette/capr_design.pdf
extras/pdf_vignette/capr_objects.pdf
extras/pdf_vignette/capr_templates.pdf
inst/WORDLIST
inst/extdata/acuteMI.csv
inst/extdata/codelistGeneratorOutputExample.csv
inst/extdata/conceptSetExpressionAtlasExportExample.csv
inst/extdata/selectionFromConceptTable.csv
man/Capr-package.Rd
man/CensoringCriteria-class.Rd
man/Concept-class.Rd
man/ConceptSet-class.Rd
man/ConceptSetItem-class.Rd
man/Criteria-class.Rd
man/DrugExposureExit-class.Rd
man/Endpoint-class.Rd
man/EventAperture-class.Rd
man/EventWindow-class.Rd
man/FixedDurationExit-class.Rd
man/Group-class.Rd
man/ObservationExit-class.Rd
man/ObservationWindow-class.Rd
man/Occurrence-class.Rd
man/Query-class.Rd
man/age.Rd
man/as.data.frame-ConceptSet-method.Rd
man/as.json.Rd
man/atLeast.Rd
man/atMost.Rd
man/attributes.Rd
man/attrition.Rd
man/bt.Rd
man/censoringEvents.Rd
man/cohort.Rd
man/compile-methods.Rd
man/compile.Rd
man/conceptAttribute-class.Rd
man/conditionEra.Rd
man/conditionOccurrence.Rd
man/conditionType.Rd
man/continuousObservation.Rd
man/cs.Rd
man/dateAdjustment.Rd
man/dateAdjustmentAttribute-class.Rd
man/daysOfSupply.Rd
man/death.Rd
man/deviceExposure.Rd
man/drugEra.Rd
man/drugExit.Rd
man/drugExposure.Rd
man/drugQuantity.Rd
man/drugRefills.Rd
man/drugType.Rd
man/duringInterval.Rd
man/endDate.Rd
man/entry.Rd
man/eq.Rd
man/equals-methods.Rd
man/era.Rd
man/eventEnds.Rd
man/eventStarts.Rd
man/exactly.Rd
man/exit.Rd
man/figures/logo.png
man/firstOccurrence.Rd
man/fixedExit.Rd
man/getConceptSetCall.Rd
man/getConceptSetDetails.Rd
man/gt.Rd
man/gte.Rd
man/logicAttribute-class.Rd
man/lt.Rd
man/lte.Rd
man/makeCohortSet.Rd
man/measurement.Rd
man/measurementType.Rd
man/nbt.Rd
man/nestedAttribute-class.Rd
man/nestedWithAll.Rd
man/nestedWithAny.Rd
man/nestedWithAtLeast.Rd
man/nestedWithAtMost.Rd
man/observation.Rd
man/observationExit.Rd
man/observationType.Rd
man/opAttributeDate-class.Rd
man/opAttributeInteger-class.Rd
man/opAttributeNumeric-class.Rd
man/opAttributeSuper-class.Rd
man/procedure.Rd
man/procedureType.Rd
man/rangeHigh.Rd
man/rangeLow.Rd
man/readConceptSet.Rd
man/startDate.Rd
man/toCirce.Rd
man/unit.Rd
man/valueAsNumber.Rd
man/visit.Rd
man/visitType.Rd
man/withAll.Rd
man/withAny.Rd
man/withAtLeast.Rd
man/withAtMost.Rd
man/writeCohort.Rd
man/writeConceptSet.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/resources/T2DMGroup.json
tests/testthat/resources/cohortTest.json
tests/testthat/resources/conceptSetsList.rds
tests/testthat/test-AdditionalCriteria.R
tests/testthat/test-attributes.R
tests/testthat/test-cohort.R
tests/testthat/test-collectCodesetId.R
tests/testthat/test-conceptSet.R
tests/testthat/test-exit.R
tests/testthat/test-nest.R
tests/testthat/test-window.R
vignettes/.gitignore
vignettes/Capr-conceptSets.Rmd
vignettes/Examples.Rmd
vignettes/Using-Capr.Rmd
vignettes/capr_design.Rmd
vignettes/capr_objects.Rmd
vignettes/capr_templates.Rmd
vignettes/images/aperture1.png
vignettes/images/aperture2.png
vignettes/images/aperture3.png
vignettes/images/aperture4.png
vignettes/images/criteria_example.png
