Man pages for OHDSI/Capr
Cohort Definition Application Programming
| age | Function to create age attribute |
| as.data.frame-ConceptSet-method | Coerce a concept set expression to a dataframe |
| as.json | Coerce Capr object to json |
| atLeast | Function to enumerate an minimal count of occurrences |
| atMost | Function to enumerate a maximum count of occurrences |
| attributes | Add male attribute to a query |
| attrition | Create a cohort attrition object |
| bt | Between operator |
| Capr-package | Capr: Cohort Definition Application Programming |
| CensoringCriteria-class | An S4 class identifying a censoring criteria for the cohort |
| censoringEvents | Constructor for a set of censoring events |
| cohort | Function that creates a cohort object |
| compile | Compile a Capr object to json |
| compile-methods | Compile a Capr cohort to json |
| conceptAttribute-class | An S4 class for a concept attribute |
| Concept-class | An S4 class for a single OMOP Concept |
| ConceptSet-class | An S4 class for ConceptSetExpresion |
| ConceptSetItem-class | An S4 class for ConceptSetItem |
| conditionEra | Query the condition era domain |
| conditionOccurrence | Query the condition domain |
| conditionType | Add a condition type attribute to determine the provenance of... |
| continuousObservation | A function to construct the observationWindow |
| Criteria-class | An S4 for a criteria |
| cs | Create a concept set |
| dateAdjustment | Function to create age attribute |
| dateAdjustmentAttribute-class | An S4 class for a date adjustment attribute |
| daysOfSupply | Function to create days supply attribute |
| death | Query the condition era domain |
| deviceExposure | Query the drug domain |
| drugEra | Query the drug era domain |
| drugExit | Function to create an exit based on exit based on the end of... |
| drugExposure | Query the drug domain |
| DrugExposureExit-class | An S4 class for a cohort exit based on continuous exposure... |
| drugQuantity | Function to create quantity attribute |
| drugRefills | Function to create refills attribute |
| drugType | Add a drug type attribute to determine the provenance of the... |
| duringInterval | Function that creates an eventAperture an opening where an... |
| endDate | Function that creates a end date attribute |
| Endpoint-class | An S4 class for an Endpoint |
| entry | Create a cohort entry criteria |
| eq | Equal to operator |
| equals-methods | FUnction checks if two concept set class objects are... |
| era | Create a Cohort Era class object |
| EventAperture-class | An S4 class for Aperture |
| eventEnds | Function creates an event window where the event ends |
| eventStarts | Function creates an event window where the event starts |
| EventWindow-class | An S4 class for a Window |
| exactly | Function to enumerate an exact count of occurrences |
| exit | Function that creates a cohort exit object |
| firstOccurrence | Add first occurrence attribute |
| FixedDurationExit-class | An S4 class for a cohort exit based on fixed duration... |
| fixedExit | Function to create an exit based on exit based on the end of... |
| getConceptSetCall | Create the Capr code to build a concept set |
| getConceptSetDetails | Fill in Concept Set details using a vocab |
| Group-class | An S4 class for a group |
| gt | Greater than operator |
| gte | Greater than or equal to operator |
| logicAttribute-class | An S4 class for a logical attribute |
| lt | Less than operator |
| lte | Less than or equal to operator |
| makeCohortSet | Make a cohort dataframe for cohort generator |
| measurement | Query the measurement domain |
| measurementType | Add a measurement type attribute to determine the provenance... |
| nbt | Not between operator |
| nestedAttribute-class | An S4 class for a nested attribute |
| nestedWithAll | Construct a nested group where all criteria and groups must... |
| nestedWithAny | Function to construct a nested group where any criteria and... |
| nestedWithAtLeast | Function to construct a nested group where at least some of... |
| nestedWithAtMost | Function to construct a nested group where at most some of... |
| observation | Query the observation domain |
| observationExit | Function to create an exit based on continuous observation |
| ObservationExit-class | An S4 class for a cohort exit based on end of continuous... |
| observationType | Add a observation type attribute to determine the provenance... |
| ObservationWindow-class | An S4 class for an ObservationWindow |
| Occurrence-class | An S4 class for an occurrence. |
| opAttributeDate-class | An S4 class for a op attribute that is a date |
| opAttributeInteger-class | An S4 class for a op attribute that is an integer |
| opAttributeNumeric-class | An S4 class for a op attribute that is a numeric |
| opAttributeSuper-class | An S4 super class for other opAttribute objects to inherit. |
| procedure | Query the procedure domain |
| procedureType | Add a procedure type attribute to determine the provenance of... |
| Query-class | An S4 class for a Circe Query |
| rangeHigh | Function to create rangeHigh attribute |
| rangeLow | Function to create rangeLow attribute |
| readConceptSet | Read a concept set json or csv into R |
| startDate | Function that creates a start date attribute |
| toCirce | Function to coerce cohort to circe |
| unit | Add unit attribute to a query |
| valueAsNumber | Function to create valueAsNumber attribute |
| visit | Query the visit occurrence domain |
| visitType | Add a visit type attribute to determine the provenance of the... |
| withAll | Function to construct a group where all criteria and groups... |
| withAny | Function to construct a group where any criteria and groups... |
| withAtLeast | Function to construct a group where at least some of the... |
| withAtMost | Function to construct a group where at most some of the... |
| writeCohort | Write Cohort json file |
| writeConceptSet | Save a concept set as a json file |
