Files in OJWatson/kenya_al_failure
Analysis of AL failure in Kenya
.Rbuildignore
.Rprofile
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
DESCRIPTION
LICENSE
Makefile
NAMESPACE
R/combinations.R
R/or.R
R/utils-pipe.R
R/utils-plot.R
README.Rmd
README.md
analysis/00_data_incoming.R
analysis/01_table1.R
analysis/02_oocyst_patterns.R
analysis/03_mvregressions.R
analysis/04_treatment_failures.R
analysis/05_mapping.R
analysis/data/derived/all.rds
analysis/data/derived/feed.rds
analysis/data/raw/903_feeding.dta
analysis/data/raw/all.dta
analysis/data/raw/homesteadgeo.dta
analysis/data/raw/lake/GSHHS_c_L1.dbf
analysis/data/raw/lake/GSHHS_c_L1.prj
analysis/data/raw/lake/GSHHS_c_L1.shp
analysis/data/raw/lake/GSHHS_c_L1.shx
analysis/data/raw/monthly_rainfall.csv
analysis/plots/Figure2.pdf
analysis/plots/Figure2.tiff
analysis/plots/Figure3.pdf
analysis/plots/Figure3.tiff
analysis/plots/Figure4.pdf
analysis/plots/Figure4.tiff
analysis/plots/all_treatment_failures.pdf
analysis/plots/all_treatment_failures_1.pdf
analysis/plots/all_treatment_failures_1.png
analysis/plots/all_treatment_failures_2.pdf
analysis/plots/all_treatment_failures_2.png
analysis/plots/all_treatment_failures_3.pdf
analysis/plots/all_treatment_failures_3.png
analysis/plots/all_treatment_failures_4.pdf
analysis/plots/all_treatment_failures_4.png
analysis/plots/all_treatment_failures_5.pdf
analysis/plots/all_treatment_failures_5.png
analysis/plots/asexual_ors.pdf
analysis/plots/asexual_ors.png
analysis/plots/gland_prevalence.pdf
analysis/plots/gland_prevalence.png
analysis/plots/lpf_duration.pdf
analysis/plots/lpf_duration.png
analysis/plots/map.pdf
analysis/plots/map.png
analysis/plots/oocyst_patterns.pdf
analysis/plots/oocyst_patterns.png
analysis/plots/ors_combined.pdf
analysis/plots/ors_combined.png
analysis/plots/ors_combined.svg
analysis/plots/rainfall.pdf
analysis/plots/rainfall.png
analysis/plots/sexual_ors.pdf
analysis/plots/sexual_ors.png
analysis/plots/treatment_failures.pdf
analysis/plots/treatment_failures.png
analysis/plots/treatment_failures_post_edit.pdf
analysis/plots/treatment_failures_post_edit.png
analysis/plots/treatment_failures_post_edit.svg
analysis/plots/treatment_failures_post_edit_backup.pdf
analysis/tables/Table1.csv
analysis/tables/Table2.csv
analysis/tables/Table3.csv
analysis/tables/supp_table2.csv
analysis/tables/supp_table3.csv
analysis/tables/supp_table4a.csv
analysis/tables/supp_table4b.csv
analysis/tables/supp_table4c.csv
analysis/tables/supp_table5.csv
analysis/tables/supp_table_6.csv
kenya_al_failure.Rproj
man/cp_path.Rd
man/gen_combinations.Rd
man/or_plot.Rd
man/pipe.Rd
man/rbind_list_base.Rd
man/save_figs.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
