Man pages for OchoaLab/genbin
R wrappers for binaries in genetics
| bolt_lmm | Run BOLT-LMM '–lmm' and returns table of association... |
| delete_files_assoc | Delete GEMMA output |
| delete_files_bolt | Delete BOLT-LMM output |
| delete_files_emmax_lmm | Delete EMMAX outputs |
| delete_files_gcta_hsq | Delete GCTA REML output |
| delete_files_gcta_mlma | Delete GCTA MLMA output |
| delete_files_log | Delete LOG file |
| delete_files_logtxt | Delete GEMMA LOG file |
| delete_files_pca | Delete PCA outputs |
| delete_files_plink_glm | Delete 'plink2 –glm' output |
| delete_files_plink_hardy | Delete 'plink2 –hardy' output |
| delete_files_tped | Delete TPED/TFAM files |
| emmax_kin | Estimate kinship with EMMAX |
| emmax_lmm | Run EMMAX and returns table of association statistics. |
| gcta_grm | Estimate kinship (GRM) with GCTA |
| gcta_mlma | Run GCTA MLMA and returns table of association statistics. |
| gcta_pca | Estimate principal components with GCTA |
| gcta_reml | Run GCTA REML and return the estimated heritability. |
| gemma_kin | Estimate kinship with GEMMA |
| gemma_lmm | Run GEMMA and returns table of association statistics. |
| genbin-package | genbin: R wrappers for binaries in genetics |
| plink1_bed_to_tped | Reformat BED/BIM/FAM to TPED/TFAM |
| plink_glm | Run 'plink2 –glm' and returns table of association... |
| plink_hardy | Calculate Hard-Weinberg equilibrium (HWE) p-values and other... |
| plink_pca | Estimate principal components with plink2 |
| read_bolt_lmm | Read BOLT-LMM statistics table |
| read_emmax_ps | Read EMMAX statistics table |
| read_gcta_hsq | Read GCTA REML variance components table |
| read_gcta_mlma | Read GCTA MLMA statistics table |
| read_gemma_assoc | Read GEMMA statistics table |
| read_plink_glm | Read 'plink2 –glm' association table |
| read_plink_hardy | Read 'plink2 –hardy' output table |
| require_files_tped | Require that (old) plink transposed files are present |
| system3 | Run a system command quietly unless there's errors |
