Files in OchoaLab/simfam

Simulate and Model Family Pedigrees with Structured Founders

LICENSE.md NEWS.md R/RcppExports.R R/admix_fam.R R/admix_last_gen.R R/bim_add_posg.R R/data.R R/draw_couples_nearest.R R/draw_num_children_per_fam.R R/draw_sex.R R/fam_ancestors.R R/geno_fam.R R/geno_last_gen.R R/geno_last_gen_admix_recomb.R R/indexes_chr_range.R R/kinship_fam.R R/kinship_last_gen.R R/match_fam_founders.R R/pop_recomb.R R/pop_recomb_chr.R R/prune_fam.R R/recomb_admix_inds.R R/recomb_breaks.R R/recomb_chr.R R/recomb_fam.R R/recomb_founder_blocks_inherited.R R/recomb_geno_inds.R R/recomb_hap.R R/recomb_haplo_chr.R R/recomb_haplo_hap.R R/recomb_haplo_ind.R R/recomb_haplo_inds.R R/recomb_init_founders.R R/recomb_last_gen.R R/recomb_map_chr.R R/recomb_map_fix_ends_chr.R R/recomb_map_hap.R R/recomb_map_ind.R R/recomb_map_inds.R R/recomb_map_lengs.R R/recomb_map_posg.R R/recomb_map_simplify_chr.R R/sim_pedigree.R R/simfam-package.R R/tidy_recomb_map_inds.R README.md cran-comments.md man/admix_fam.Rd man/admix_last_gen.Rd man/bim_add_posg.Rd man/draw_sex.Rd man/fam_ancestors.Rd man/geno_fam.Rd man/geno_last_gen.Rd man/geno_last_gen_admix_recomb.Rd man/indexes_chr.Rd man/kinship_fam.Rd man/kinship_last_gen.Rd man/pop_recomb.Rd man/prune_fam.Rd man/recomb_admix_inds.Rd man/recomb_fam.Rd man/recomb_founder_blocks_inherited.Rd man/recomb_geno_inds.Rd man/recomb_haplo_inds.Rd man/recomb_init_founders.Rd man/recomb_last_gen.Rd man/recomb_map_fix_ends_chr.Rd man/recomb_map_hg.Rd man/recomb_map_inds.Rd man/recomb_map_simplify_chr.Rd man/sim_pedigree.Rd man/simfam-package.Rd man/tidy_recomb_map_inds.Rd scripts/error-rate.R scripts/make-data-map-hg38.R scripts/runtime-draw-couples-nearest.R scripts/runtime-update-kinship-children.R tests/testthat.R tests/testthat/test-recomb.R tests/testthat/test-simfam.R vignettes/simfam.Rmd