Man pages for OchoaLab/simfam
Simulate and Model Family Pedigrees with Structured Founders
| admix_fam | Calculate admixture matrix of a pedigree with known admixture... |
| admix_last_gen | Calculate admixture matrix for last generation of a pedigree... |
| bim_add_posg | Calculate genetic positions from base pair positions and a... |
| draw_sex | Draw sex values randomly for a list of individuals |
| fam_ancestors | Construct an ancestors-only pedigree for one person... |
| geno_fam | Draw random genotypes on a pedigree with known founder... |
| geno_last_gen | Draw random genotypes for last generation of a pedigree with... |
| geno_last_gen_admix_recomb | Simulate an admixed family efficiently with founders with LD |
| indexes_chr | Extract last index of every chromosome in a vector of... |
| kinship_fam | Calculate kinship matrix of a pedigree with structured... |
| kinship_last_gen | Calculate kinship matrix for last generation of a pedigree... |
| pop_recomb | Simulate genotypes with linkage disequilibrium (LD) given a... |
| prune_fam | Remove non-ancestors of a set of individuals from pedigree |
| recomb_admix_inds | Reduce haplotype ancestry data to population ancestry dosage... |
| recomb_fam | Draw recombination breaks for autosomes from a pedigree |
| recomb_founder_blocks_inherited | Identify IBD blocks of founders that were inherited by at... |
| recomb_geno_inds | Reduce haplotype data to genotype matrix |
| recomb_haplo_inds | Construct haplotypes of individuals given their ancestral... |
| recomb_init_founders | Initialize chromosome structures for founders |
| recomb_last_gen | Draw recombination breaks for autosomes for last generation... |
| recomb_map_fix_ends_chr | Extrapolate and shift recombination map of one chromosome to... |
| recomb_map_hg | Simplified recombination maps for human genomes |
| recomb_map_inds | Map recombination breaks from genetic positions to base pair... |
| recomb_map_simplify_chr | Simplify recombination map of one chromosome to a desired... |
| simfam-package | Simulate and Model Family Pedigrees With Structured Founders |
| sim_pedigree | Construct a random pedigree |
| tidy_recomb_map_inds | Tidy recombination block data inherited in individuals from... |
