Man pages for OscarGOGO/Makurhini
Makurhini: Analyzing landscape connectivity
| close_multiprocess | Close parallel process |
| connections_dIIC | Estimate dIIC link |
| connections_dPC | Estimate dPC link |
| cost_distances | Estimate isotropic cost distances |
| dECAfun | Function to contrast differences of dA and dECA |
| dECAfun2 | Function to contrast differences of dA and dECA |
| delta_ProtConn | Delta ProtConn |
| delta_ProtConn_raster | Delta ProtConn |
| dispersal_distance | Estimate dispersal distance using home range |
| distancefile | Get a table or matrix with the distances between pairs of... |
| dist_original | Distance matrix between habitat nodes in Spain |
| dist_restoration | Distance matrix between habitat nodes in Spain after an... |
| div | Divide two numbers |
| Ecoregions | Ecoregions vector for analysis |
| EstConefor | Estimation of connectivity indexes from CONEFOR |
| euclidean_distances | Euclidian distances |
| EXTraster | Function to have two raster with the same number of rows,... |
| get_grid | ProtConn: input files |
| get_pc_grid | Estimates PC metric |
| get_protconn_grid | Estimates ProtConn metric and fractions for a grid |
| get_sdist | Estimate all shortest distance between nodes using weights |
| habitat_nodes | Nodes shapefile for analysis |
| habitat_nodes_raster | habitat nodes in raster format |
| habitat_nodes_spain | File of habitat nodes in Spain |
| input_grid | ProtConn: input files |
| list_forest_patches | List of vegetation patches |
| make_grid | Make grid |
| merge_conefor | Join a connectivity index (dIIC o dPC, and the "intra",... |
| metric_class | Generates metric class |
| MK_BCentrality | Betweenness Centrality metrics using Conefor command line |
| MK_Connect_grid | Connectivity indexes in a regular grid |
| MK_dECA | Estimate the ECA, rECA, dA and dECA. |
| MK_dECA_grid | Estimate the ECA, dA and dECA in a regular grid |
| MK_dPCIIC | Estimate the probability of connectivity (PC) or the integral... |
| MK_dPCIIC_links | Estimate the differential of the connectivity indexes IIC and... |
| MK_Focal_nodes | Estimate the focal integral index of connectivity or the... |
| MK_fragmentation | Fragmentation Statistics |
| MK_ProtConn | Protected Connected (ProtConn) |
| MK_ProtConnMult | Multiple Protected Connected (ProtConn) |
| MK_ProtConn_raster | Protected Connected (ProtConn) using raster nodes |
| MK_RMCentrality | Estimate radial and medial centrality measures. |
| moveme | Move columns |
| mult | Multiply two numbers |
| nodes_dIIC | Estimate dIIC |
| nodes_dIIC_res | Estimate restoration using IIC |
| nodes_dPC | Estimate dPC |
| nodes_dPC_res | Estimate restoration using PC |
| nodesfile | Creation of nodefile attribute. |
| num_vert | Number of vertices |
| over_poly | over sf |
| PIntercsect | intersect polygons |
| plotprotconn | Protected Connected (ProtConn) |
| pol_dissolve | Dissolve polygones sf or SpatialPolygonsDataFrame |
| probability_distance | Plot probability of dispersal |
| protconn_dist | Estimates nodes distances to ProtConn |
| ProtConn_Estimation | Protconn estimation |
| ProtConn_Estimation_raster | Protconn estimation raster |
| Protconn_nodes | Generates ProtConn nodes files |
| ProtConnStat | Multiple ProtConn statistic |
| Protected_areas_raster | Protected areas raster for analysis |
| rast_clump_points | Get centroid clumb raster |
| resistance_matrix | Landscape resistance to dispersal |
| st_centroid_within_poly | st_centroid_within_poly |
| study_area | Study area example |
| test_metric_distance | Test the ECA or ProtConn metrics using multiple dispersal... |
| TMVS | Trans-Mexican Volcanic System (TMVS) |
| TopoClean | Topological error correction |
| unit_convert | Convert numeric types from one area unit to another |
