Files in OxfordRSE/NTDMC_trachoma_pipeline
What the Package Does (One Line, Title Case)
.Rbuildignore
.gitignore
CONTRIBUTING.md
CONTRIBUTING.org
DESCRIPTION
NAMESPACE
R/dopipeline.R
R/get_scenario_and_group.R
R/group_ius.R
R/make_mda_file.R
R/model_wrapper.R
R/read_and_check_params.R
R/resampling.R
R/sample_prevalence_map.R
README.md
data/FinalData.csv
input.yaml
man/group_ius_according_to_mean_prevalence.Rd
ntd-cluster-example/README.md
ntd-cluster-example/batch.sh
ntd-cluster-example/input.yaml
ntd-cluster-example/run_pipeline.R
reference_pipeline/README.md
reference_pipeline/data_cleaning/FindIUsCode.R
reference_pipeline/diagram.pdf
reference_pipeline/diagramm.mmd
reference_pipeline/diagramm.png
reference_pipeline/find_200_values/AMIS_five_iterations_orig.R
reference_pipeline/find_200_values/AMIS_source.R
reference_pipeline/find_200_values/AMIS_two_iterations.R
reference_pipeline/find_200_values/AMIS_two_iterations_orig.R
reference_pipeline/find_200_values/AMS_two_iterations.Rout
reference_pipeline/find_200_values/Createpy.R
reference_pipeline/find_200_values/Step1-GroupScenDefinition.R
reference_pipeline/find_200_values/Step2-CreateFilesPrev.R
reference_pipeline/find_200_values/Step3-Trachoma_AMIS_perprev.R
reference_pipeline/find_200_values/Trachoma_AMIS_perprevntd.sh
reference_pipeline/find_200_values/data/FinalDataPrev.csv
reference_pipeline/find_200_values/files/InputMDA_scen36.csv
reference_pipeline/find_200_values/generate_prevalence_map.R
reference_pipeline/find_200_values/prevalence_map.csv
reference_pipeline/find_200_values/test.csv
reference_pipeline/find_200_values/tests/test_AMIS_trachoma.R
reference_pipeline/find_200_values/tests/test_data/ESS_iteration_2.csv
reference_pipeline/find_200_values/tests/test_data/ESS_iteration_3.csv
reference_pipeline/find_200_values/tests/test_data/ESS_iteration_4.csv
reference_pipeline/find_200_values/tests/test_data/ESS_iteration_5.csv
reference_pipeline/find_200_values/tests/test_data/InputBet_scen36_group2_it1.csv
reference_pipeline/find_200_values/tests/test_data/InputBet_scen36_group2_it2.csv
reference_pipeline/find_200_values/tests/test_data/InputBet_scen36_group2_it3.csv
reference_pipeline/find_200_values/tests/test_data/InputBet_scen36_group2_it4.csv
reference_pipeline/find_200_values/tests/test_data/InputBet_scen36_group2_it5.csv
reference_pipeline/find_200_values/tests/test_data/OutputPrev_scen36_group2_it1.csv
reference_pipeline/find_200_values/tests/test_data/OutputPrev_scen36_group2_it2.csv
reference_pipeline/find_200_values/tests/test_data/param_iteration_1.csv
reference_pipeline/find_200_values/tests/test_data/param_iteration_2.csv
reference_pipeline/find_200_values/tests/test_data/param_iteration_3.csv
reference_pipeline/find_200_values/tests/test_data/param_iteration_4.csv
reference_pipeline/find_200_values/tests/test_data/param_iteration_5.csv
reference_pipeline/find_200_values/trachoma/__init__.py
reference_pipeline/find_200_values/trachoma/trachoma_functions.py
reference_pipeline/find_200_values/trachoma/trachoma_simulations.py
reference_pipeline/run_200/MakeclusterFiles.R
reference_pipeline/run_200/trachoma/__init__.py
reference_pipeline/run_200/trachoma/trachoma_functions.py
reference_pipeline/run_200/trachoma/trachoma_simulations.py
reference_pipeline/run_200/trachoma_run200.py
tests/testthat.R
tests/testthat/test_get_scenario_or_group.R
tests/testthat/test_iu_grouping.R
tests/testthat/test_resampling.R
tests/testthat/test_sample_prevalence_map.R
