Man pages for PayamEmami/mixedcirc
Circadian rhythm analysis using mixed models
| construct_introns | Construct introns from GRanges object |
| mixedcirc_adjust | Perform p-value adjustment on mixedcirc_fit_list |
| mixedcirc_boot-class | Represents the result of bootstrap testing for mixed... |
| mixedcirc_boottest | Bootstrap Testing for Circadian Data |
| mixedcirc_compare | Compares circadian rhythm |
| mixedcirc_detect | Perform differential circadian rhythm analysis using mixed... |
| mixedcirc_detectpeaks | Finds peak of a rhythm |
| mixedcirc_detrend | Removes linear trend from the fitted circadian rhythm |
| mixedcirc_fit-class | Represents the result of model fitting on a single variable. |
| mixedcirc_fit_list-class | Represents the result of model fitting on several variables. |
| mixedcirc_fit_plot | Plots circadian rhythm |
| mixedcirc_fitted | Extract the fitted circadian rhythm |
| mixedcirc_getscore | Retrieved scores from mixedcirc_integration |
| mixedcirc_integrate | Circadian rhythm integration |
| mixedcirc_integration-class | Represents the result of integration on multiple data sets |
| mixedcirc_interpolate | Generate circadian rhythm |
| mixedcirc_remove_trend | Removes linear trend from the data |
| mixedcirc_rrbs_voom_mixed | Transform RRBS data for linear mixed modelling (experimental) |
| mixed_circ_tss_calculation | Function for reading exon intron and promoter structure from... |
| print.mixedcirc_fit | Plots circadian rhythm |
| shallow | shallow copy a 'data.table' |
| show-mixedcirc_fit-method | Prints circadian rhythm |
| variance_fit | This function is used to calculate sigma of fit. |
