Man pages for PennChopMicrobiomeProgram/abxidx
Modeling the Susceptibility of a Bacterial Community to Antibiotics

antibiotic_specific_susceptibilityDetermine susceptibility to vancomycin
antibiotic_susceptibilityEvaluate susceptibility based on antibiotic-specific...
mirixCalculate Microbiome Response Index (MiRIx) values
mirix_antibioticCalculate antibiotic-specific MiRIx values
phenotype_susceptibilityEvaluate antibiotic susceptibility based on phenotype
predict_abundancePredict taxon abundances at given values of an index
weiss2021_dataExample data from Weiss et al.
PennChopMicrobiomeProgram/abxidx documentation built on July 1, 2024, 7:05 p.m.