Man pages for PennChopMicrobiomeProgram/abxidx
Modeling the Susceptibility of a Bacterial Community to Antibiotics
| antibiotic_specific_susceptibility | Determine susceptibility to vancomycin |
| antibiotic_susceptibility | Evaluate susceptibility based on antibiotic-specific... |
| mirix | Calculate Microbiome Response Index (MiRIx) values |
| mirix_antibiotic | Calculate antibiotic-specific MiRIx values |
| phenotype_susceptibility | Evaluate antibiotic susceptibility based on phenotype |
| predict_abundance | Predict taxon abundances at given values of an index |
| weiss2021_data | Example data from Weiss et al. |
