Files in Philip-Cooney/PiecewiseChangepoint
Piecewise Exponential Models with Unknown Change-points
.Rbuildignore
.gitignore
DESCRIPTION
Examples/Collapsing_Model.rds
Examples/Conditional_Death_UK.xlsx
Examples/CumHaz_plot.png
Examples/File Structure.png
Examples/GPM hazards.png
Examples/Gorrod Overview.png
Examples/SimSurv_data.png
Examples/Surv-1-chng.png
Examples/Surv-2-chng.png
Examples/Surv_plot.png
Examples/TA268 Data-source.png
Examples/df.rds
Examples/mod_comp.rds
Examples/mod_comp2.rds
Examples/mod_comp_weibull.rds
Examples/plt_Survival.png
Files_Replicate_Analysis/Chapter 3 examples/All Examples Combined - Chapter 3.R
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison.zip
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Chapple Simulation Backup Functions.R
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Chapple Simulation.R
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.5_0.75_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_0.75_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.25_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.2_0.75_0.2_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_0.75_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.5_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.25_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.2_0.75_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_0.25_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_0.5_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_plots/ISSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_plots/ISSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_plots/RMSE_restrict.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_plots/RMSE_time_horizon.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_size_100_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_size_300_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_size_500_censor_0.33.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Compare_RJMCMC_0.75_size_500_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/No Change-point Scenarios.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/One Change-point Scenarios.png
Files_Replicate_Analysis/Chapter 3 examples/Chapple Comparison/Two Change-point Scenarios.png
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.25_0.5_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.25_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.25_size_100_censor_0.5.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.25_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.25_size_200_censor_0.5.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.25_size_200_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.2_0.75_0.2_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.5_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.5_size_100_censor_0.5.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.5_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.5_size_200_censor_0.5.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.5_size_200_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_0.25_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_0.2_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_0.5_0.25_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_0.5_size_300_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_size_100_censor_0.5.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_size_100_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_size_200_censor_0.5.rds
Files_Replicate_Analysis/Chapter 3 examples/SimStudy-Res/Collapsing_rate_0.75_size_200_censor_0.rds
Files_Replicate_Analysis/Chapter 3 examples/Simulation Study.R
Files_Replicate_Analysis/Chapter 5 Change-point Models/2023-07-22data.res_2.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/2023-07-24data.res_2.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/2023-07-24data.res_3.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/2023-07-29data.res_2.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/2023-08-05data.res_3.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/All Change-point Models covariate age.R
Files_Replicate_Analysis/Chapter 5 Change-point Models/BRIM-3/BRIM-3/Dacarbazine/KM_curve.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/BRIM-3/BRIM-3/Dacarbazine/Pseudo_IPD.xlsx
Files_Replicate_Analysis/Chapter 5 Change-point Models/BRIM-3/BRIM-3/Vemurafenib/KM_curve.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/BRIM-3/BRIM-3/Vemurafenib/Pseudo_IPD.xlsx
Files_Replicate_Analysis/Chapter 5 Change-point Models/Changepoint-Posterior-Distribution.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Common-Final-Weibull-model-GPM.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Common-Final-Weibull-model.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Conditional_Death_UK.xlsx
Files_Replicate_Analysis/Chapter 5 Change-point Models/Converge-HR-Weibull-model.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Converge-Haz-Weibull-model.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Expoential-Haz-Converge-TA269.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Exponential-Haz-Converge-TA269.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Jags_codes.R
Files_Replicate_Analysis/Chapter 5 Change-point Models/KEYNOTE-24/KEYNOTE-024/Chemo/KM_curve.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/KEYNOTE-24/KEYNOTE-024/Chemo/Pseudo_IPD.xlsx
Files_Replicate_Analysis/Chapter 5 Change-point Models/KEYNOTE-24/KEYNOTE-024/Pembro/KM_curve.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/KEYNOTE-24/KEYNOTE-024/Pembro/Pseudo_IPD.xlsx
Files_Replicate_Analysis/Chapter 5 Change-point Models/PH-Weibull-model.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Royston-Parmar-Spline-Model.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Simulation Study-Update.R
Files_Replicate_Analysis/Chapter 5 Change-point Models/Simulation Study.R
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347-Kaplan-Meier.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_Doce_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_Doce_OS_Initial/KM curve.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_Doce_OS_Initial/KMdata.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_Doce_OS_Initial/OS-D.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_Doce_OS_Initial/TA347_Doce_OS_Initial.xlsx
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_Doce_OS_Initial/nrisk.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_Doce_OS_Initial/survival.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_N_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_N_OS_Initial/KM curve.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_N_OS_Initial/KMdata.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_N_OS_Initial/OS-N.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_N_OS_Initial/TA347_N_OS_Initial.xlsx
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_N_OS_Initial/nrisk.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/TA347_N_OS_Initial/survival.txt
Files_Replicate_Analysis/Chapter 5 Change-point Models/Tretament-Delay-TA347-Weibull-No-CP.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Tretament-Delay-TA347.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/Weibull-Haz-Converge-TA269.png
Files_Replicate_Analysis/Chapter 5 Change-point Models/data.res_1.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/data.res_2.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/data.res_3.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/e1690.missing.dat
Files_Replicate_Analysis/Chapter 5 Change-point Models/summary_output_df_cox_partial.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/summary_output_df_weib_cox.csv
Files_Replicate_Analysis/Chapter 5 Change-point Models/weibull Change-point with GPM.R
Files_Replicate_Analysis/Conditional_Death_UK.xlsx
Files_Replicate_Analysis/Digitizing_R_code_Final_Share.R
Files_Replicate_Analysis/GPM_examples_final.R
Files_Replicate_Analysis/Readme Update/Abstract attempt RHTA.docx
Files_Replicate_Analysis/Readme Update/Archive/Chapple Simulation Backup Functions.R
Files_Replicate_Analysis/Readme Update/Archive/Chapple Simulation.R
Files_Replicate_Analysis/Readme Update/Archive/Sim Study - Expert Bias.R
Files_Replicate_Analysis/Readme Update/Examples/Collapsing_Model.rds
Files_Replicate_Analysis/Readme Update/Examples/Conditional_Death_UK.xlsx
Files_Replicate_Analysis/Readme Update/Examples/CumHaz_plot.png
Files_Replicate_Analysis/Readme Update/Examples/Digitizing_R_code_Final_Share.R
Files_Replicate_Analysis/Readme Update/Examples/File Structure.png
Files_Replicate_Analysis/Readme Update/Examples/GPM hazards.png
Files_Replicate_Analysis/Readme Update/Examples/Gorrod Overview.png
Files_Replicate_Analysis/Readme Update/Examples/SimSurv_data.png
Files_Replicate_Analysis/Readme Update/Examples/Simulation Study.R
Files_Replicate_Analysis/Readme Update/Examples/Summary of Piecewise +KM models updated 10-March.xlsx
Files_Replicate_Analysis/Readme Update/Examples/Surv-1-chng.png
Files_Replicate_Analysis/Readme Update/Examples/Surv-2-chng.png
Files_Replicate_Analysis/Readme Update/Examples/Surv-all.png
Files_Replicate_Analysis/Readme Update/Examples/Surv_mod_comp.png
Files_Replicate_Analysis/Readme Update/Examples/Surv_plot.png
Files_Replicate_Analysis/Readme Update/Examples/TA268 Data-source.png
Files_Replicate_Analysis/Readme Update/Examples/df.rds
Files_Replicate_Analysis/Readme Update/Examples/mod_comp2.rds
Files_Replicate_Analysis/Readme Update/Examples/plt_hazards.png
Files_Replicate_Analysis/Readme Update/ExamplesGPM hazards.png
Files_Replicate_Analysis/Readme Update/GenFiles.R
Files_Replicate_Analysis/Readme Update/README.Rmd
Files_Replicate_Analysis/Readme Update/README_files/figure-gfm/unnamed-chunk-10-1.png
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Files_Replicate_Analysis/Readme Update/README_update.docx
Files_Replicate_Analysis/Readme Update/references.bib
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.25_0.5_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.25_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.25_size_100_censor_0.5.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.25_size_100_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.25_size_200_censor_0.5.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.25_size_200_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.2_0.75_0.2_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.5_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.5_size_100_censor_0.5.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.5_size_100_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.5_size_200_censor_0.5.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.5_size_200_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_0.25_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_0.2_0.75_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_0.5_0.25_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_0.5_size_300_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_size_100_censor_0.5.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_size_100_censor_0.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_size_200_censor_0.5.rds
Files_Replicate_Analysis/SimStudy-Res/Collapsing_rate_0.75_size_200_censor_0.rds
Files_Replicate_Analysis/Simulation Study.R
Files_Replicate_Analysis/Summary of Piecewise TAs.xlsx
Files_Replicate_Analysis/TA268_GP100_OS_Initial/GP100-OS.csv
Files_Replicate_Analysis/TA268_GP100_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA268_GP100_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA268_GP100_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA268_GP100_OS_Initial/TA268_GP100_OS_Initial.xlsx
Files_Replicate_Analysis/TA268_GP100_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA268_GP100_OS_Initial/survival.txt
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/GP100-PFS.csv
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/TA268-PFS.png
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/TA268_GP100_PFS_Initial.xlsx
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA268_GP100_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA268_Ipi_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA268_Ipi_OS_Initial/Ipi-OS.csv
Files_Replicate_Analysis/TA268_Ipi_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA268_Ipi_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA268_Ipi_OS_Initial/TA268_Ipi_OS_Initial.xlsx
Files_Replicate_Analysis/TA268_Ipi_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA268_Ipi_OS_Initial/survival.txt
Files_Replicate_Analysis/TA268_Ipi_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA268_Ipi_PFS_Initial/Ipi-PFS.csv
Files_Replicate_Analysis/TA268_Ipi_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA268_Ipi_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA268_Ipi_PFS_Initial/TA268_Ipi_PFS_Initial.xlsx
Files_Replicate_Analysis/TA268_Ipi_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA268_Ipi_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA269_D_OS_Initial/BRIM-OS-D.csv
Files_Replicate_Analysis/TA269_D_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA269_D_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA269_D_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA269_D_OS_Initial/TA269_D_OS_Initial.xlsx
Files_Replicate_Analysis/TA269_D_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA269_D_OS_Initial/survival.txt
Files_Replicate_Analysis/TA269_D_PFS_Initial/IPDdata.txt
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Files_Replicate_Analysis/TA269_D_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA269_D_PFS_Initial/TA269_D_PFS_Initial.xlsx
Files_Replicate_Analysis/TA269_D_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA269_D_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA269_V_OS_Initial/BRIM-OS-V.csv
Files_Replicate_Analysis/TA269_V_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA269_V_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA269_V_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA269_V_OS_Initial/TA269_V_OS_Initial.xlsx
Files_Replicate_Analysis/TA269_V_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA269_V_OS_Initial/survival.txt
Files_Replicate_Analysis/TA269_V_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA269_V_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA269_V_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA269_V_PFS_Initial/TA269_V_PFS_Initial.xlsx
Files_Replicate_Analysis/TA269_V_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA269_V_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA347_Doce_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA347_Doce_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA347_Doce_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA347_Doce_OS_Initial/OS-D.csv
Files_Replicate_Analysis/TA347_Doce_OS_Initial/TA347_Doce_OS_Initial.xlsx
Files_Replicate_Analysis/TA347_Doce_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA347_Doce_OS_Initial/survival.txt
Files_Replicate_Analysis/TA347_Doce_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA347_Doce_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA347_Doce_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA347_Doce_PFS_Initial/PFS-D.csv
Files_Replicate_Analysis/TA347_Doce_PFS_Initial/TA347_Doce_PFS_Initial.xlsx
Files_Replicate_Analysis/TA347_Doce_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA347_Doce_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA347_N_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA347_N_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA347_N_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA347_N_OS_Initial/OS-N.csv
Files_Replicate_Analysis/TA347_N_OS_Initial/TA347_N_OS_Initial.xlsx
Files_Replicate_Analysis/TA347_N_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA347_N_OS_Initial/survival.txt
Files_Replicate_Analysis/TA347_N_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA347_N_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA347_N_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA347_N_PFS_Initial/PFS - N.csv
Files_Replicate_Analysis/TA347_N_PFS_Initial/TA347_N_PFS_Initial.xlsx
Files_Replicate_Analysis/TA347_N_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA347_N_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_D/IPDdata.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_D/KM curve.png
Files_Replicate_Analysis/TA396_D+T_OS_Initial_D/KMdata.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_D/TA396_D+T_OS_Initial_D.xlsx
Files_Replicate_Analysis/TA396_D+T_OS_Initial_D/nrisk.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_D/survival.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_V/IPDdata.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_V/KM curve.png
Files_Replicate_Analysis/TA396_D+T_OS_Initial_V/KMdata.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_V/TA396_D+T_OS_Initial_V.xlsx
Files_Replicate_Analysis/TA396_D+T_OS_Initial_V/nrisk.txt
Files_Replicate_Analysis/TA396_D+T_OS_Initial_V/survival.txt
Files_Replicate_Analysis/TA396_D+T_OS_Update/COMBI-D+T-OS-Update.csv
Files_Replicate_Analysis/TA396_D+T_OS_Update/IPDdata.txt
Files_Replicate_Analysis/TA396_D+T_OS_Update/KM curve.png
Files_Replicate_Analysis/TA396_D+T_OS_Update/KMdata.txt
Files_Replicate_Analysis/TA396_D+T_OS_Update/OS.png
Files_Replicate_Analysis/TA396_D+T_OS_Update/TA396_D+T_OS_Update.xlsx
Files_Replicate_Analysis/TA396_D+T_OS_Update/nrisk.txt
Files_Replicate_Analysis/TA396_D+T_OS_Update/survival.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_D/IPDdata.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_D/KM curve.png
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_D/KMdata.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_D/TA396_D+T_PFS_Initial_D.xlsx
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_D/nrisk.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_D/survival.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_V/IPDdata.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_V/KM curve.png
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_V/KMdata.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_V/TA396_D+T_PFS_Initial_V.xlsx
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_V/nrisk.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Initial_V/survival.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Update/COMBI-D+T-PFS.csv
Files_Replicate_Analysis/TA396_D+T_PFS_Update/IPDdata.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Update/KM curve.png
Files_Replicate_Analysis/TA396_D+T_PFS_Update/KMdata.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Update/PFS.png
Files_Replicate_Analysis/TA396_D+T_PFS_Update/TA396_D+T_PFS_Update.xlsx
Files_Replicate_Analysis/TA396_D+T_PFS_Update/nrisk.txt
Files_Replicate_Analysis/TA396_D+T_PFS_Update/survival.txt
Files_Replicate_Analysis/TA396_D_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA396_D_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA396_D_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA396_D_PFS_Initial/PFS - D.csv
Files_Replicate_Analysis/TA396_D_PFS_Initial/TA396_D_PFS_Initial.xlsx
Files_Replicate_Analysis/TA396_D_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA396_D_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA396_V_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA396_V_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA396_V_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA396_V_PFS_Initial/PFS - V.csv
Files_Replicate_Analysis/TA396_V_PFS_Initial/TA396_V_PFS_Initial.xlsx
Files_Replicate_Analysis/TA396_V_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA396_V_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/Backup/IPDdata.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/Backup/KM curve.png
Files_Replicate_Analysis/TA428_PEM_OS_Initial/Backup/KMdata.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/Backup/nrisk.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/Backup/survival.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/KEYNOTE-10-OS-Lancet.png
Files_Replicate_Analysis/TA428_PEM_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA428_PEM_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/TA428_PEM_OS_Initial.xlsx
Files_Replicate_Analysis/TA428_PEM_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA428_PEM_OS_Initial/survival.txt
Files_Replicate_Analysis/TA428_PEM_OS_Update/IPDdata.txt
Files_Replicate_Analysis/TA428_PEM_OS_Update/KEYNOTE-10-5Y.csv
Files_Replicate_Analysis/TA428_PEM_OS_Update/KM curve.png
Files_Replicate_Analysis/TA428_PEM_OS_Update/KMdata.txt
Files_Replicate_Analysis/TA428_PEM_OS_Update/TA428_PEM_OS_Update.xlsx
Files_Replicate_Analysis/TA428_PEM_OS_Update/nrisk.txt
Files_Replicate_Analysis/TA428_PEM_OS_Update/survival.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/PFS-KM.png
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/PFS.csv
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/TA447_Doce_PFS_Initial.xlsx
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Update/IPDdata.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Update/KM curve.png
Files_Replicate_Analysis/TA447_Doce_PFS_Update/KMdata.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Update/PFS.csv
Files_Replicate_Analysis/TA447_Doce_PFS_Update/PFS.png
Files_Replicate_Analysis/TA447_Doce_PFS_Update/TA447_Doce_PFS_Update.xlsx
Files_Replicate_Analysis/TA447_Doce_PFS_Update/nrisk.txt
Files_Replicate_Analysis/TA447_Doce_PFS_Update/survival.txt
Files_Replicate_Analysis/TA447_PEM_OS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA447_PEM_OS_Initial/KM OS.png
Files_Replicate_Analysis/TA447_PEM_OS_Initial/KM curve.png
Files_Replicate_Analysis/TA447_PEM_OS_Initial/KMdata.txt
Files_Replicate_Analysis/TA447_PEM_OS_Initial/OS.csv
Files_Replicate_Analysis/TA447_PEM_OS_Initial/TA447_PEM_OS_Initial.xlsx
Files_Replicate_Analysis/TA447_PEM_OS_Initial/nrisk.txt
Files_Replicate_Analysis/TA447_PEM_OS_Initial/survival.txt
Files_Replicate_Analysis/TA447_PEM_OS_Update/IPDdata.txt
Files_Replicate_Analysis/TA447_PEM_OS_Update/KM curve.png
Files_Replicate_Analysis/TA447_PEM_OS_Update/KMdata.txt
Files_Replicate_Analysis/TA447_PEM_OS_Update/OS-KM.png
Files_Replicate_Analysis/TA447_PEM_OS_Update/OS.csv
Files_Replicate_Analysis/TA447_PEM_OS_Update/TA447_PEM_OS_Update.xlsx
Files_Replicate_Analysis/TA447_PEM_OS_Update/nrisk.txt
Files_Replicate_Analysis/TA447_PEM_OS_Update/survival.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/IPDdata.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/KM curve.png
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/KMdata.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/PFS-KM.png
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/PFS.csv
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/TA447_PEM_PFS_Initial.xlsx
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/nrisk.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Initial/survival.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Update/IPDdata.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Update/KM curve.png
Files_Replicate_Analysis/TA447_PEM_PFS_Update/KMdata.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Update/PFS.csv
Files_Replicate_Analysis/TA447_PEM_PFS_Update/PFS.png
Files_Replicate_Analysis/TA447_PEM_PFS_Update/TA447_PEM_PFS_Update.xlsx
Files_Replicate_Analysis/TA447_PEM_PFS_Update/nrisk.txt
Files_Replicate_Analysis/TA447_PEM_PFS_Update/survival.txt
Files_Replicate_Analysis/VBA PEM.xlsm
Files_Replicate_Analysis/pub_plots_tabs/Piecewise_TA_results.xlsx
Files_Replicate_Analysis/pub_plots_tabs/TA396_DT_OS_AUC.xlsx
Files_Replicate_Analysis/pub_plots_tabs/TA396_DT_OS_Surv.png
Files_Replicate_Analysis/pub_plots_tabs/TA396_DT_PFS_AUC.xlsx
Files_Replicate_Analysis/pub_plots_tabs/TA396_DT_PFS_Surv.png
Files_Replicate_Analysis/pub_plots_tabs/TA428_PEM_OS_AUC.xlsx
Files_Replicate_Analysis/pub_plots_tabs/TA428_PEM_OS_Initial_hazards.png
Files_Replicate_Analysis/pub_plots_tabs/TA428_PEM_OS_Surv.png
Files_Replicate_Analysis/pub_plots_tabs/TA447_PEM_OS_AUC.xlsx
Files_Replicate_Analysis/pub_plots_tabs/TA447_PEM_OS_Surv.png
LICENSE
LICENSE.md
NAMESPACE
PiecewiseChangepoint.Rproj
PiecewiseChangepoint_1.0.zip
R/RcppExports.R
R/collapsing_model.R
R/gibbs_sampler.R
R/helper.R
README.Rmd
README.md
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README_files/figure-gfm/unnamed-chunk-11-1.png
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To Do when updating Package
graph 1.html
inst/CITATION
man/PiecewiseChangepoint.Rd
man/chain.mixing.Rd
man/collapsing.model.Rd
man/compare.surv.mods.Rd
man/digitise.Rd
man/fit_surv_models.Rd
man/gen_piece_df.Rd
man/get.loglik.Rd
man/plot.changepoint.Rd
man/print.changepoint.Rd
references.bib
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/code.cpp
