Man pages for PhilipMostert/inlabruSDMs
Fit Models Derived from Point Processes to Species Distributions using 'inlabru'
| BBA | Dataset of setophaga caerulescens obtained from the... |
| BBS | Dataset of setophaga caerulescens obtained from the North... |
| BBSColinusVirginianus | Dataset of Colinus Virginianus obtained from the North... |
| blockedCV | _blockedCV_: run spatial blocked cross-validation on the... |
| blockedCV-class | Export class blockedCV |
| blockedCVpred-class | Export class blockedCVpred |
| bruSDM-class | Export bru_sdm class |
| bruSDM_predict-class | Export class predict_bru_sdm |
| changeCoords | _changeCoords_: function used to change coordinate names. |
| checkCoords | _checkCoords_: function used to check coordinate names. |
| checkVar | _checkVar_: Function used to check variable names. |
| data2ENV | _data2ENV_: function used to move objects from one... |
| dataOrganize | R6 class to assist in reformatting the data to be used in... |
| dataSet | Internal function used to standardize datasets, as well as... |
| datasetOut | _datasetOut_: function that removes a dataset out of the main... |
| datasetOut-class | Export class bru_sdm_leave_one_out |
| eBird | data.frame object containing solitary tinamou observations... |
| elev_raster | Raster object containing the elevation across Pennsylvania... |
| fitISDM | _fitISDM_: function used to run the integrated model. |
| Gbif | data.frame object containing solitary tinamou observations... |
| intModel | _intModel_: Function used to initialize the integrated... |
| Koala | Dataset of Eucalyptus globulus (common name: blue gum)... |
| makeFormulaComps | _makeFormulaComps_: function to make components for the... |
| makeLhoods | _makeLhoods_: function to make likelihoods. |
| modISDM-class | Export modISDM class |
| modISDM_predict-class | Export class predict.modISDM |
| modMarks-class | Export modMarks class |
| modMarks_predict-class | Export class predict_modMarks |
| modSpecies-class | Export modSpecies class |
| modSpecies_predict-class | Export class predict_modSpecies |
| nameChanger | _nameChanger_: function to change a variable name. |
| nearestValue | nearestValue: Match species location data to environmental... |
| NLCD_canopy_raster | Raster object containing the canopy cover across Pennsylvania... |
| Parks | data.frame object containing solitary tinamou observations... |
| plot | Generic plot function for 'predict_bru_sdm'. |
| predict | Generic predict function for 'bru_SDM' objects. |
| print.blockedCV | Print function for 'blockedCV'. |
| print.blockedCVpred | Print function for 'blockedCV'. |
| print.bruSDM | Generic print function for 'bruSDM'. |
| print.bruSDM_predict | Generic print function for 'bru_sdm_predict'. |
| print.datasetOut | Generic print function for 'datasetOut'. |
| print.modISDM | Generic print function for 'modISDM'. |
| print.modMarks | Generic print function for 'modMarks'. |
| print.modSpecies | Generic print function for 'modSpecies'. |
| reduceComps | reduceComps: Reduce the components of the model. |
| region | sf object containing the boundary region for solitary... |
| removeFormula | removeFormula: Function to remove term from a formula. |
| runModel | _runModel_: function used to run the integrated model. Note... |
| SetophagaData | List of all data objects used for the Setophaga vignette. |
| SolitaryTinamou | List of all data objects used for the solitary tinamou... |
| SolTinCovariates | spatRaster object containing covariate values |
| specifyISDM | R6 class for creating a 'startISDM' object. |
| specifyMarks | R6 class for creating a 'specifyMarks' object. |
| specifySpecies | R6 class for creating a 'startSpecies' object. |
| startISDM | _startISDM_: Function used to initialize the integrated... |
| startMarks | _startMarks_: Function used to initialize a marked-point... |
| startSpecies | _startSpecies_: Function used to initialize a multi-species... |
| summary | Generic summary function for 'bruSDM'. |
