Man pages for PointProcess/SealPupProduction-JRSSC-code
| BasicGridCreation | Do not both to write help function |
| BasicResultExtraction | Transform covariates to new grid |
| BasicResultExtractionGAM | Do not both to write help function |
| ComparePhotoCountsAndPred | Posterior summary statistics for GAM |
| ComparePhotoCountsAndPredGAM | Comparison of photos counts and predictions for GAM |
| ComputePostPredDist | Computing the posterior predictive distribution of total area... |
| ComputePostPredDistforPredPhotos | Computing the posterior predictive distribution of total area... |
| coo2sp | Transform regular coordinates to SpatialPolygons |
| CovariateCreationFunction | Function for creating a dense grid with all covariate values |
| covAtNewGrid | Transform covariates to new grid |
| covGridCreationNonlinear | Creating the grid for the nonlinear covariates |
| covGridVal.nonlinear | Nonlinear covariate effects at grid |
| CreateCountDomainPolygon | Create counting domain polygon |
| CreateVoronoiTessellation | Computing weights based on Voronoi tessellation |
| DefToGlob | Default function values to global variables |
| FullPostPredDistGAM | Do not both to write help function |
| GAMFittingFunc | Do not both to write help function |
| GAMImpute | Do not both to write help function |
| GAMImputePred | Do not both to write help function |
| getstr | String extraction function |
| GridCreation | Grid creation |
| GridPointsInPredPhotos | Grid Points in prediction photos |
| GridPointsInPredPhotosGAM | Do not both to write help function |
| IndepMeshCreation | Basic data independent mesh creation |
| INLAPPSealsContLikApprox | Seal counting using INLA and continuous field Poisson process... |
| INLAPPSealsPoissonReg | Seal counting using INLA and Poisson regression formulation |
| IntegrateVectorizedGrids | Integrate over sampled filed on a grid |
| int.polygon | Integration points for polygons inside an inla.mesh |
| int.polygon.MJ | Integration points for polygons inside an inla.mesh usign... |
| lapplyIntegrateVectorizedGrids | Wrapper for IntegrateVectorizedGrids |
| lapplymeanPostPredDistGAMBoth | Wrapper for samplePostPredDistGAM |
| lapplysamplePostPredDistGAM | Wrapper for samplePostPredDistGAM |
| lapplysamplePostPredDistGAMPoisson | Wrapper for samplePostPredDistGAM |
| lb2xykm | Contributed by Tor Arne Øigård |
| MeanNegbinDist | Probability distribution computation for a mean of Negative... |
| MeanNegbinDistMat | Probability distribution computation for a mean of Negative... |
| MeanNegbinDistRev | Reversed probability distribution computation for a mean of... |
| MeanPoissonDist | Probability distribution computation for a mean of Poisson... |
| MeanPoissonDistMat | Probability distribution computation for a mean of Poisson... |
| MeanPoissonDistRev | Reversed Probability distribution computation for a mean of... |
| meanPostPredDistGAMBoth | Sample postpredDistGAM |
| MergePolygons | Merge polygons |
| MeshCreationMatchingRectangles | Mesh creation for rectangle matching |
| MeshPointsInPredPhotos | Mesh points in prediction photos |
| multiCoo2sp | Transform regular coordinates to SpatialPolygons |
| PhotoPostPredDist | Computing the posterior predictive distribution for single... |
| PhotoPostPredDistGAM | Do not both to write help function |
| PhotoPostPredDistold | Computing the posterior predictive distribution for single... |
| postPredDistGAMFunc | Do not both to write help function |
| PrepareINLAFunc | Prepare for running INLA functio |
| PrepareINLAFuncContLikApprox | Prepare for running INLA function with continuous likelihood... |
| rnbinomPredPhoto | Reversed negative binomial sampler |
| rnbinomSum | Reversed negative binomial sampler |
| rpoisPredPhoto | Reversed poisson sampler for pred photo |
| rpoisSum | Reversed poisson sampler |
| samplePostPredDistGAM | Sample postpredDistGAM |
| samplePostPredDistGAMPoisson | Sample postpredDistGAM |
| samplePostPredDistGAMPoissonPredPhoto | Sample samplePostPredDistGAMPoisson |
| samplePostPredDistGAMPredPhoto | Sample postpredDistGAM |
| split.lines | Split lines at mesh edges |
| SummaryPlotFunc | Summary plot |
| SummaryPlotFuncContLikApprox | Summary plot for continuous likelihood approximation approach |
| SummaryPlotFuncGAM | Do not both to write help function |
| SummaryStat | Posterior summary statistics |
