Files in PriceLab/ChIPseqMotifMatch
Assess motif match in ChIP-seq bam fiels
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/ChIPseqMotifMatch.R
README.md
bulk/GSM749704/makefile
bulk/GSM749704/runFimo.R
bulk/chr19-demo/GSM749704 Plot/GSM749704 CTCF Plot.png
bulk/chr19-demo/GSM749704 Plot/createPlotCTCF.R
bulk/chr19-demo/addFimoToMACS2NarrowPeaks.R
bulk/chr19-demo/ctcf-human.meme
bulk/chr19-demo/ctcfCombined.csv
bulk/chr19-demo/ctcfCombined_revised.csv
bulk/chr19-demo/ctcf__peaks.narrowPeak
bulk/chr19-demo/ctcf_chr19.bam
bulk/chr19-demo/ctcf_chr19.bam.bai
bulk/chr19-demo/demo_peaks.narrowPeak
bulk/chr19-demo/fimoBatchTools.R
bulk/chr19-demo/makefile
bulk/chr19-demo/tbl.fimoBeforeColumnsFixes.RData
ctcfCombined.csv
inst/extdata/GSM749704_hg19_Ctcf_chr19.bam
inst/unitTests/test_ChIPseqMotifMatch.R
makefile
man/ChIPseqMotifMatch-class.Rd
man/calculateNarrowPeaks.Rd
man/getBamFilename.Rd
man/getRegionsOfInterest.Rd
man/setRegionsOfInterest.Rd
