Files in PriceLab/TrenaProjectBrainCell
Temporal cortex gene expression deconvoluted into cell types
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/TrenaProjectBrainCell.R
README.md
inst/demos/trenaViz/makefile
inst/demos/trenaViz/tv.R
inst/docker/Dockerfile
inst/docker/makefile
inst/docker/packages/makefile
inst/extdata/expression/Astro_FGFR3.RData
inst/extdata/expression/Exc_ALL.RData
inst/extdata/expression/Exc_FEZF2.RData
inst/extdata/expression/Exc_LINC00507.RData
inst/extdata/expression/Exc_RORB.RData
inst/extdata/expression/Exc_THEMIS.RData
inst/extdata/expression/Inh_ALL.RData
inst/extdata/expression/Inh_LAMP5.RData
inst/extdata/expression/Inh_PVALB.RData
inst/extdata/expression/Inh_SST.RData
inst/extdata/expression/Inh_VIP.RData
inst/extdata/expression/MayoRNAseq_RNAseq_TCX_geneCounts_normalized.tsv
inst/extdata/expression/Micro_TYROBP.RData
inst/extdata/expression/OPC_PDGFRA.RData
inst/extdata/expression/Oligo_OPALIN.RData
inst/extdata/expression/TCX_counts_scaled.RData
inst/extdata/expression/TCX_counts_scaled_old.RData
inst/extdata/expression/celltype_expr_Astro_FGFR3.tsv
inst/extdata/expression/celltype_expr_Exc_FEZF2.tsv
inst/extdata/expression/celltype_expr_Exc_LINC00507.tsv
inst/extdata/expression/celltype_expr_Exc_RORB.tsv
inst/extdata/expression/celltype_expr_Exc_THEMIS.tsv
inst/extdata/expression/celltype_expr_Inh_LAMP5.tsv
inst/extdata/expression/celltype_expr_Inh_PVALB.tsv
inst/extdata/expression/celltype_expr_Inh_SST.tsv
inst/extdata/expression/celltype_expr_Inh_VIP.tsv
inst/extdata/expression/celltype_expr_Micro_TYROBP.tsv
inst/extdata/expression/celltype_expr_OPC_PDGFRA.tsv
inst/extdata/expression/celltype_expr_Oligo_OPALIN.tsv
inst/extdata/expression/ensemble_ids.RData
inst/extdata/geneSets/basic.txt
inst/extdata/prep/cibersort_bootstrap_summary.rda
inst/extdata/prep/countTransform.R
inst/extdata/prep/ct.adjusted.microglia.RData
inst/extdata/prep/dataTransform.R
inst/extdata/prep/mtx.combine.R
inst/extdata/prep/mtx.inh.R
inst/extdata/prep/regressing.R
inst/extdata/prep/temp_transform.R
inst/gsm/combineModels.R
inst/gsm/combineModels2.R
inst/gsm/combineModels3.R
inst/gsm/combineModels4.R
inst/gsm/combineModels5.R
inst/gsm/config.R
inst/gsm/config_noDNA.R
inst/gsm/nohup.out
inst/gsm/runByChunks20.sh
inst/gsm/runMany-old.R
inst/gsm/runMany.R
inst/gsm/runMany_noDNA.R
inst/unitTests/test_TrenaProjectBrainCell.R
makefile
man/TrenaProjectBrainCell-class.Rd
prep/import/expression/extractTissueSpecificMatrix.R
prep/import/expression/grokLiverRelatedSamples.R
prep/import/variants/readAndRearrange.R
