Files in PriceLab/TrenaProjectLymphocyte
Lymphocyte gene expression and variant data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/TrenaProjectLymphocyte.R
README.md
inst/demos/gsm/config.R
inst/demos/gsm/generateSegmentedBashScript.R
inst/demos/gsm/runMany.R
inst/demos/sgm/lag3.R
inst/demos/trenaViz/installPrerequisites.R
inst/demos/trenaViz/makefile
inst/demos/trenaViz/tv.R
inst/docker/Dockerfile
inst/docker/makefile
inst/docker/packages/makefile
inst/extdata/expression/GTEX.lymphocyte.rna-seq-geneSymbols.21415x130.RData
inst/extdata/expression/GTEX.wholeBlood.rna-seq-geneSymbols.22330x407.RData
inst/extdata/geneSets/longevity-pilling-2017.txt
inst/extdata/geneSets/tce.txt
inst/unitTests/test_NoEnhancersForGene.R
inst/unitTests/test_TrenaProjectLymphocyte.R
inst/unitTests/test_findNegativeRegulators.R
makefile
man/TrenaProjectLymphocyte-class.Rd
prep/import/chang/Memory_CD8_T_cells-eomesRegion.tsv
prep/import/chang/Naive_CD8_T_cells-eomesRegion.tsv
prep/import/chang/chang-2019.pdf
prep/import/chang/tme-tcells.peaks.RData
prep/import/expression/extractFromAsinchedMatrix.R
prep/import/expression/extractLymphocyteExpression.R
prep/import/expression/extractTissueSpecificMatrix.R
prep/import/expression/extractWholeBloodExpression.R
prep/import/expression/grokBloodRelatedSamples.R
prep/import/variants/readAndRearrange.R
