Files in PriceLab/bigFimo
BigFimo
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BigFimo.R
README.md
docker/Dockerfile.1
docker/Dockerfile.2
docker/Dockerfile.trenaBase
docker/components/.bashrc
docker/components/bigFimo.yaml
docker/components/createNewMemeFile.R
docker/components/demoRunRScript.bash
docker/components/fimo
docker/components/fimoBatchTools.R
docker/components/human-jaspar2018-hocomoco-swissregulon.meme
docker/components/human-jaspar2022-hocomoco-core-A.meme
docker/components/human-jaspar2024-hocomocov13.meme
docker/components/installPrerequisitePackages-2.R
docker/components/installPrerequisitePackages.R
docker/components/motifs.meme
docker/components/pilraMicro.csv
docker/components/runBigFimo.R
docker/components/runBigFimoFromFile.R
docker/components/runBigFimoWithChromLocsTable.R
docker/components/runGene.R
docker/components/test_BigFimoPackage.R
docker/makefile
explore/chooseRegions.R
explore/runBigFimo-oneTf-oneChromosome.R
explore/runBigFimo.B4GALT3.R
explore/runBigFimo.FCER1G.R
explore/runBigFimo.NDUFS2.R
explore/runBigFimo.anyGene.R
explore/runBigFimo.anyLoc.R
helpers/rbind.R
helpers/runGene.R
helpers/smallTest.fa
helpers/smallTest2.fa
helpers/tmp-fimo-out-3/test.fa
helpers/tmp-fimo-out-3/test.tsv
inst/demos/BACH1/fimo.BACH1.chr21.29304270.29320980.Fri-Aug-6-10:34:05-2021.RData
inst/demos/BACH1/fimo.BACH1.chr21.29305400.29320060.RData
inst/demos/bach1.R
inst/demos/jaspar2018-hocomocoCore.meme
inst/demos/makefile
inst/demos/ndufs2.R
inst/demos/tspan14-1MB.R
inst/demos/tspan14.R
inst/helpers/fimoProcess-hg38.R
inst/helpers/fimoProcess-mm10.R
inst/unitTests/jaspar2022.meme
inst/unitTests/klf1.meme
inst/unitTests/makefile
inst/unitTests/motifs.meme
inst/unitTests/old_test_BigFimo.R
inst/unitTests/test_BigFimo.R
jaspar2018-hocomocoCoreA.meme
jaspar2018-hocomocov10-mouse.meme
jaspar2022-human.meme
makefile
man/BigFimo.Rd
man/subdivideGenomicRegion.Rd
