Files in PriceLab/endophenotypeExplorer
EndophenotypeExplorer
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/EndophenotypeExplorer.R
R/MotifBreaker.R
R/TrenaModelsSplitOnEQTL.R
README.md
explore/andrewBaumgartner/adGwas38-ampad-genotypes.tsv
explore/andrewBaumgartner/gwasLociGenotypes.R
explore/andrewBaumgartner/tmp.tsv
explore/bicor/bicorDemo.R
explore/motifbreakR/eqtl-motifbreakR.R
explore/motifbreakR/motifs.50.80.pkt2b.RData
explore/motifbreakR/ptk2b-eqtls-17-broken.RData
explore/motifbreakR/ptk2b/analyzeBreaks.R
explore/motifbreakR/ptk2b/bestBreaks.R
explore/motifbreakR/ptk2b/eqtl-motifbreakR.R
explore/motifbreakR/ptk2b/eqtl-motifbreakR.R-newer
explore/motifbreakR/ptk2b/motifs.2tfs.3motifs.pkt2b.RData
explore/motifbreakR/ptk2b/motifs.38tfs.60motifs.pkt2b.RData
explore/motifbreakR/ptk2b/motifs.50.80.pkt2b.RData
explore/motifbreakR/ptk2b/nohup.out
explore/motifbreakR/ptk2b/ptk2b.eqtls.bottom.200.08Sep.1212.motifbreaks.RData
explore/motifbreakR/ptk2b/ptk2b.eqtls.top.14.07Sep.0640.motifbreaks.RData
explore/motifbreakR/ptk2b/ptk2b.eqtls.top.14.08Sep.0947.motifbreaks.RData
explore/motifbreakR/ptk2b/ptk2b.eqtls.top.14.08Sep.1017.motifbreaks.RData
explore/motifbreakR/ptk2b/ptk2b.eqtls.top.3.07Sep.0630.motifbreaks.RData
explore/motifbreakR/ptk2b/pvals-top14.R
explore/motifbreakR/ptk2b/results.top14.pval.RData
inst/demos/app.R
inst/demos/bin1-early.R
inst/demos/bin1.R
inst/demos/mtx.int.RData
inst/demos/pilra.R
inst/demos/rareVariants.R
inst/demos/rs4575098.R
inst/extdata/biospecimen/MSBB_biospecimen_metadata.csv
inst/extdata/biospecimen/MayoRNAseq_biospecimen_metadata.csv
inst/extdata/biospecimen/ROSMAP_biospecimen_metadata.csv
inst/extdata/chromLocs.hg19.for.rsidMapping.RData
inst/extdata/clinical/MSBB_individual_metadata.csv
inst/extdata/clinical/MayoRNAseq_individual_metadata.csv
inst/extdata/clinical/ROSMAP_clinical.csv
inst/extdata/gtex/tbl.gencode-v26-GRCh38.RData
inst/extdata/gtex/tissues.RData
inst/extdata/gwas/populationCodes.tsv
inst/extdata/gwas/tbl.posthuma-38-geneAssociations-curated-3828x12.RData
inst/extdata/gwas/tbl.posthuma-38-loci-curated.RData
inst/extdata/gwas/williams-natureNeuroscience2020.RData
inst/extdata/idMapping/tbl.sampleToPatientMap-rosmap-mayo-sinai.RData
inst/extdata/idMapping/tbl.vcfToPatientIDs.RData
inst/extdata/motifs-7-for-NDUFS2.RData
inst/extdata/rsids-100-for-NDUFS2.RData
inst/unitTests/gr.ndufs2.variants.RData
inst/unitTests/gr.variants.NDUFS2.eqtls.86.RData
inst/unitTests/makefile
inst/unitTests/motifBreakerData/eqtl.ptk2b.100.RData
inst/unitTests/test_MotifBreaker.R
inst/unitTests/test_TrenaModelsSplitOnEQTL.R
inst/unitTests/test_endophenotypeExplorer.R
makefile
man/EndophenotypeExplorer-class.Rd
prep/alfa/biosamples.txt
prep/alfa/exploreAlfa.R
