Files in Przemol/mirrors-bioc-BSgenome
Infrastructure for Biostrings-based genome data packages
DESCRIPTION
NAMESPACE
NEWS
R/BSgenome-class.R
R/BSgenome-utils.R
R/BSgenomeForge.R
R/GenomeData-class.R
R/GenomeDataList-class.R
R/GenomeDescription-class.R
R/InjectSNPsHandler-class.R
R/OnDiskNamedSequences-class.R
R/SNPlocs-class.R
R/available.genomes.R
R/bsapply.R
R/gdReduce.R
R/gdapply.R
R/getSeq-methods.R
R/injectSNPs.R
R/utils.R
TODO
build/vignette.rds
inst/doc/BSgenomeForge.R
inst/doc/BSgenomeForge.Rnw
inst/doc/BSgenomeForge.pdf
inst/doc/GenomeSearching.R
inst/doc/GenomeSearching.Rnw
inst/doc/GenomeSearching.pdf
inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-seed
inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh
inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed
inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT
inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh
inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed
inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed
inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.01222004-seed
inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed
inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed
inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT
inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed
inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed
inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed
inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed
inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed
inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed
inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed
inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed
inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed
inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed
inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed
inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed
inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed
inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed
inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed
inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed
inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed
inst/extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed
inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed
inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed
inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed
inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed
inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed
inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed
inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed
inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed
inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed
inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed
inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed
inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed
inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed
inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed
inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed
inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed
inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed
inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed
inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed
inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed
inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8.masked-seed
inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed
inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed
inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed
inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed
inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed
inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed
inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed
inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed
inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed
inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed
inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed
inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed
inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed
inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed
inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/splitbigfasta.R
inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed
inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed
inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed
inst/extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed
inst/extdata/GentlemanLab/ForgeAll.R
inst/extdata/GentlemanLab/bump_seed_version.sh
inst/extdata/ce2chrM.fa
inst/extdata/ce2dict0.fa
inst/pkgtemplates/BSgenome_datapkg/DESCRIPTION
inst/pkgtemplates/BSgenome_datapkg/NAMESPACE
inst/pkgtemplates/BSgenome_datapkg/R/zzz.R
inst/pkgtemplates/BSgenome_datapkg/man/package.Rd
inst/pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION
inst/pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE
inst/pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R
inst/pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd
man/BSParams-class.Rd
man/BSgenome-class.Rd
man/BSgenome-utils.Rd
man/BSgenomeForge.Rd
man/GenomeData-class.Rd
man/GenomeDataList-class.Rd
man/GenomeDescription-class.Rd
man/available.genomes.Rd
man/bsapply.Rd
man/gdReduce.Rd
man/gdapply.Rd
man/getSeq-methods.Rd
man/injectSNPs.Rd
vignettes/BSgenomeForge.Rnw
vignettes/GenomeSearching.Rnw
