Files in Public-Health-Scotland/hsmr
Reproducible Analytical Pipeline of Hospital Standardised Mortality Ratios Quarterly Publication
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/change_hbcodes.R
R/clean_model.R
R/completeness.R
R/create_open_data.R
R/create_trends.R
R/file_sizes.R
R/funnel_text.R
R/hsmr_hid.R
R/mit_available.R
R/nhs_performs.R
R/pub_date.R
R/qtr.R
R/save_file.R
R/smr_data.R
R/smr_model.R
R/smr_pmorbs.R
R/smr_wrangling.R
R/sql_ltt.R
R/sql_smr.R
R/submission_deadline.R
R/yr.R
README.md
check_templates/check_table_1.Rmd
check_templates/check_table_2.Rmd
check_templates/check_table_3.Rmd
check_templates/checking_functions.R
client
create_covid_data.R
create_excel_tables.R
create_report_and_summary.R
create_smr_data.R
create_trends_data.R
inspect_signals.R
man/change_hbcodes.Rd
man/clean_model.Rd
man/completeness.Rd
man/create_open_data.Rd
man/create_trends.Rd
man/file_sizes.Rd
man/funnel_text.Rd
man/hsmr_hid.Rd
man/mit_available.Rd
man/nhs_performs.Rd
man/pub_date.Rd
man/qtr.Rd
man/save_file.Rd
man/smr_data.Rd
man/smr_model.Rd
man/smr_pmorbs.Rd
man/smr_wrangling.Rd
man/sql_ltt.Rd
man/sql_smr.Rd
man/submission_deadline.Rd
man/yr.Rd
markdown/PHS-ACCREDITED-STATS-REPORT.Rmd
markdown/PHS-ACCREDITED-STATS-SUMMARY.Rmd
markdown/phs-accredited-stats-report_hsmr_template.dotx
markdown/phs-accredited-stats-summary.dotx
markdown/phs-accrstats-cover.docx
reference_files/Table1-HSMR.xlsx
reference_files/Table2-Crude-Mortality-subgroups.xlsx
reference_files/Table3-Crude-Mortality-population-based-and-30-day-from-discharge.xlsx
reference_files/diag_grps_lookup_updated.csv
reference_files/discovery_spec_grps.rds
reference_files/location_lookups.csv
reference_files/metadata.csv
reference_files/morbs.csv
roc/model_checks.Rmd
server
setup_environment.R
tests/testthat.R
tests/testthat/helper-completeness.R
tests/testthat/test-completeness.R
tests/testthat/test-file_sizes.R
tests/testthat/test-funnel_text.R
tests/testthat/test-mit_available.R
tests/testthat/test-pub_date.R
tests/testthat/test-qtr.R
tests/testthat/test-submission_deadline.R
tests/testthat/test-yr.R
