Man pages for QuantGen/BGData
A Suite of Packages for Analysis of Big Genomic Data
| as.BGData | Convert Other Objects to BGData Objects |
| BGData | Creates a New BGData Instance |
| BGData-class | Container for Phenotype and Genotype Data |
| BGData-package | A Suite of Packages for Analysis of Big Genomic Data |
| chunkedApply | Applies a Function on Each Row or Column of a File-Backed... |
| chunkedMap | Applies a Function on Each Chunk of a File-Backed Matrix |
| file-backed-matrices | File-Backed Matrices |
| findRelated | Find related individuals in a relationship matrix |
| FWD | Performs Forward Regressions |
| geno | Getting/Setting Genotypes, Sample Information, and Variant... |
| geno-class | An Abstract S4 Class Union of Matrix-Like Types |
| getG | Computes a Genomic Relationship Matrix |
| getG_symDMatrix | Computes a Very Large Genomic Relationship Matrix |
| GWAS | Performs Single Marker Regressions Using BGData Objects |
| load.BGData | Loads BGData (and Other) Objects from .RData Files |
| multi-level-parallelism | Multi-Level Parallelism |
| orderedMerge | Merge Two Data Frames Keeping the Order of the First |
| preprocess | Center, scale, and impute data |
| readRAW | Creates a BGData Object From a .raw File or a .ped-Like File |
| segments | Find non-overlapping segments based on a summary statistic |
| summarize | Generates Various Summary Statistics |
