Files in R-Computing-Lab/BGMisc

An R Package for Extended Behavior Genetics Analysis

CODE_OF_CONDUCT.md CONTRIBUTING.md LICENSE.md NEWS.md R/BGmisc-package.R R/buildComponent.R R/calculateFamilySize.R R/calculateRelatedness.R R/checkIDs.R R/checkParents.R R/checkPedigreeNetwork.R R/checkSex.R R/cleanPedigree.R R/constructAdjacency.R R/documentData.R R/estimateCIs.R R/helpGeneric.R R/helpPedigree.R R/identifyModel.R R/insertEven.R R/makeLinks.R R/makeLinkslegacy.R R/readGedcom.R R/readGedcomlegacy.R R/readWikifamilytree.R R/segmentPedigree.R R/simulatePedigree.R R/sliceFamilies.R R/summarizePedigree.R R/tweakPedigree.R README.Rmd README.md cran-comments.md data-raw/benchged.R data-raw/benchmark.R data-raw/df_hazard.R data-raw/df_inbreeding.R data-raw/df_potter.R data-raw/df_royal92.R data-raw/hex.R man/BGmisc-package.Rd man/Null.Rd man/addParentRow.Rd man/addPersonToPed.Rd man/addRowlessParents.Rd man/adjustKidsPerCouple.Rd man/applyTagMappings.Rd man/assignCoupleIDs.Rd man/buildBetweenGenerations.Rd man/buildTreeGrid.Rd man/buildWithinGenerations.Rd man/calcAllGens.Rd man/calcFamilySize.Rd man/calcFamilySizeByGen.Rd man/calculateCIs.Rd man/calculateH.Rd man/calculateRelatedness.Rd man/calculateSummaryDT.Rd man/checkIDs.Rd man/checkIDuniqueness.Rd man/checkParentIDs.Rd man/checkParentSex.Rd man/checkPedigreeNetwork.Rd man/checkSex.Rd man/checkWithinRowDuplicates.Rd man/collapseNames.Rd man/com2links.Rd man/combine_columns.Rd man/comp2vech.Rd man/computeParentAdjacency.Rd man/convertGrid2LongTree.Rd man/countPatternRows.Rd man/createGenDataFrame.Rd man/deduplicatePairs.Rd man/determineSex.Rd man/dot-assignParentValue.Rd man/dot-collapseNames.legacy.Rd man/dot-com2links.legacy.Rd man/dot-com2links.og.Rd man/dot-combine_columns.legacy.Rd man/dot-computeTranspose.Rd man/dot-countPatternRows.legacy.Rd man/dot-extract_info.legacy.Rd man/dot-fisherz.Rd man/dot-fisherz2r.Rd man/dot-getModalValue.Rd man/dot-loadOrComputeInverseDiagonal.Rd man/dot-loadOrComputeIsChild.Rd man/dot-loadOrComputeIsPar.Rd man/dot-loadOrComputeParList.Rd man/dot-mapFAMC2parents.legacy.Rd man/dot-mapFAMS2parents.legacy.Rd man/dot-postProcessGedcom.legacy.Rd man/dot-processParents.legacy.Rd man/dot-process_tag.legacy.Rd man/dot-readGedcom.legacy.Rd man/dropLink.Rd man/efunc.Rd man/extractMemberTable.Rd man/extract_info.Rd man/findBiggest.Rd man/findFounder.Rd man/findOldest.Rd man/fitComponentModel.Rd man/getGridNeighbors.Rd man/getWikiTreeSummary.Rd man/hazard.Rd man/identifyComponentModel.Rd man/inbreeding.Rd man/inferRelatedness.Rd man/initializeCheckpoint.Rd man/initializeRecord.Rd man/initialize_empty_df.Rd man/insertEven.Rd man/isChild.Rd man/loadOrComputeCheckpoint.Rd man/makeInbreeding.Rd man/makeTwins.Rd man/mapFAMC2parents.Rd man/mapFAMS2parents.Rd man/markPotentialChildren.Rd man/null2NA.Rd man/parseIndividualBlock.Rd man/parseNameLine.Rd man/parseTreeRelationships.Rd man/ped2add.Rd man/ped2ce.Rd man/ped2cn.Rd man/ped2com.Rd man/ped2fam.Rd man/ped2graph.Rd man/ped2maternal.Rd man/ped2mit.Rd man/ped2paternal.Rd man/populateParents.Rd man/postProcessGedcom.Rd man/potter.Rd man/processEventLine.Rd man/processParents.Rd man/process_one.Rd man/process_tag.Rd man/readGedcom.Rd man/readWikifamilytree.Rd man/recodeSex.Rd man/repairIDs.Rd man/repairParentIDs.Rd man/repairSex.Rd man/resample.Rd man/rmvn.Rd man/royal92.Rd man/simulatePedigree.Rd man/sliceFamilies.Rd man/splitIndividuals.Rd man/standardizeColnames.Rd man/summarizeFamilies.Rd man/summarizeFounder.Rd man/summarizeMatrilines.Rd man/summarizePatrilines.Rd man/summarizePedigrees.Rd man/traceTreePaths.Rd man/tryNA.Rd man/validate_and_convert_matrix.Rd man/vech.Rd tests/testthat.R tests/testthat/test-BGmisc-package.R tests/testthat/test-buildComponent.R tests/testthat/test-calculateFamilySize.R tests/testthat/test-calculateRelatedness.R tests/testthat/test-checkIDs.R tests/testthat/test-checkParents.R tests/testthat/test-checkPedigreeNetwork.R tests/testthat/test-checkSex.R tests/testthat/test-cleanPedigree.R tests/testthat/test-constructAdjacency.R tests/testthat/test-convertPedigree.R tests/testthat/test-documentData.R tests/testthat/test-estimateCIs.R tests/testthat/test-helpGeneric.R tests/testthat/test-helpPedigree.R tests/testthat/test-identifyModel.R tests/testthat/test-insertEven.R tests/testthat/test-makeLinks.R tests/testthat/test-makeLinkslegacy.R tests/testthat/test-readGedcom.R tests/testthat/test-readGedcomlegacy.R tests/testthat/test-readWikifamilytree.R tests/testthat/test-segmentPedigree.R tests/testthat/test-simulatePedigree.R tests/testthat/test-sliceFamilies.R tests/testthat/test-summarizePedigree.R tests/testthat/test-tweakPedigree.R vignettes/articles/paper.md vignettes/articles/paper.pdf vignettes/v0_network.Rmd vignettes/v1_modelingvariancecomponents.Rmd vignettes/v2_pedigree.Rmd vignettes/v3_analyticrelatedness.Rmd vignettes/v4_validation.Rmd vignettes/v5_ASOIAF.Rmd