API for RGLab/HIPCCyto
HIPC Cytometry
| Global functions | |
|---|---|
| .quadrantGate | Source code |
| apply_dump_gate_custom | Source code |
| apply_live_gate | Source code |
| apply_lymphocyte_gate | Source code |
| apply_lymphocyte_gate_custom | Source code |
| apply_nondebris_gate | Source code |
| apply_quadrant_gate | Source code |
| apply_singlet_gate | Source code |
| arcsinh_transform | Source code |
| assert_study | Source code |
| catf | Source code |
| check_inside_ellipse | Source code |
| colnames2 | Source code |
| compensate_gs | Source code |
| compute_flowClusters | Source code |
| compute_flowClusters_custom | Source code |
| compute_targets | Source code |
| convert_points_to_ellipsoid | Source code |
| create_cytoset | Source code |
| create_fcEllipsoidGate | Source code |
| create_gs | Source code |
| create_qc_files | Source code |
| custom_match_cytoset | Source code |
| detect_cores | Source code |
| encode_img | Source code |
| fetch_files | Man page Source code |
| find_nearest_sample | Source code |
| find_nearest_samples | Source code |
| find_outliers | Source code |
| find_target | Source code |
| flowclust | Source code |
| gate_gs | Source code |
| get_channel | Source code |
| get_commit_hash | Source code |
| get_dr | Source code |
| get_live_marker | Source code |
| get_marker_channel | Source code |
| get_markers | Source code |
| get_nodes | Source code |
| get_parent | Source code |
| get_range | Source code |
| get_spillover | Source code |
| get_version | Source code |
| hipccyto_asinht_trans | Source code |
| impute_by_consensus | Source code |
| impute_by_nearest | Source code |
| impute_gates | Source code |
| make_label | Source code |
| merge_batch | Source code |
| merge_metadata | Source code |
| plot_density_by_channel | Source code |
| plot_density_by_gate | Source code |
| plot_density_by_marker | Source code |
| plot_ecdf_by_channel | Source code |
| plot_ecdf_by_marker | Source code |
| plot_markers | Source code |
| process_panel | Source code |
| process_study | Man page Source code |
| qc_1d_gates | Source code |
| qc_gates | Source code |
| qc_polygon_gates | Source code |
| recover_original_gates | Source code |
| render_comparison_report | Source code |
| render_qc_report | Source code |
| render_study_report | Source code |
| save_debug | Source code |
| save_density_plots_by_gate | Source code |
| save_density_plots_by_marker | Source code |
| save_gate_plots | Source code |
| save_gate_plots_by_gate | Source code |
| save_gating_set_summary | Source code |
| save_gating_sets | Man page Source code |
| save_marker_plots | Source code |
| save_spillover_heatmaps | Source code |
| select_cluster | Source code |
| sinh_transform | Source code |
| standardize_markernames | Source code |
| summarize_gating_set | Source code |
| summarize_study | Source code |
| test_outliers | Source code |
| transform_gs | Source code |
