Files in RGLab/R2i
Tools for preparing an ImmPort Data Submission
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/LookupFns.R
R/checkTemplate.R
R/cleanTextFns.R
R/data.R
R/geo2immport.R
R/getTemplateDF.R
R/getTemplateNames.R
R/parseBSD.R
R/rawDataManipFns.R
R/transformBasicStudyDesign.R
R/transformData.R
R/utils.R
R/validateBasicStudyDesign.R
R/validateData.R
R/write.R
R2i.Rproj
README.md
codecov.yml
data-raw/ImmuneSpaceQueries.csv
data-raw/demoData.R
data-raw/lkTables.csv
data-raw/lkTables.json
data-raw/lkTables.json.2017
data-raw/lkTables.json.2018
data-raw/lkTables.json.2019
data-raw/rdaMaker.R
data-raw/templateUpdateComparison.R
data-raw/templates.csv
data-raw/templates.json
data-raw/templates.json.2017
data-raw/templates.json.2018
data-raw/templates.json.2019
data/ISFreqsAll.rda
data/ISFreqsByNm.rda
data/ImmPortLookups.rda
data/ImmPortTemplates.rda
data/demoData.rda
inst/extdata/arm_or_cohort_demo.tsv
man/ISFreqsAll.Rd
man/ISFreqsByNm.Rd
man/ImmPortLookups.Rd
man/ImmPortTemplates.Rd
man/InteractiveFindReplace.df.Rd
man/InteractiveFindReplace.vector.Rd
man/checkByContext.Rd
man/checkSpelling.Rd
man/checkTemplate.Rd
man/demoData.Rd
man/findReplace.Rd
man/geo2ImmPort.Rd
man/getIPLookupValues.Rd
man/getIPLookups.Rd
man/getTemplateDF.Rd
man/getTemplateNames.Rd
man/interactiveSpellCheck.df.Rd
man/interactiveSpellCheck.vector.Rd
man/parseBSD.Rd
man/transform_Data.Rd
man/transform_basicStudyDesign.Rd
man/write_txt.Rd
tests/testthat.R
tests/testthat/basic_study_design.txt
tests/testthat/test-checkTemplate.R
tests/testthat/test-getTemplateDF.R
tests/testthat/test-lookup.R
tests/testthat/test-write.R
vignettes/.gitignore
vignettes/howto_basicStudyDesign.Rmd
vignettes/howto_subjectsHuman.Rmd
