Man pages for RIVM-IIV-Microbiome/biomeStats
Methods for carrying out association studies of the microbiome
| caretRFRepeatedCV | Random Forest with Repeated Cross Validation |
| check.strata | check.strata |
| create.names | Create variable names |
| doAssociationAnalysis | Check for taxa-metadata associations |
| doKruskalWallisTest | Do Kruskal-Wallis Test Taxa and Multiple Groups |
| doWilcoxTest | Do a Blocked Wilcox Test Taxa on Groups |
| FuentesIliGutData | FuentesIliGutData |
| illustrate.ONE.association | Illustrate ONE association |
| illustrate.ONE.association.BY.STRATUM | Illustrate.ONE.association.BY.STRATUM |
| prepSampleData | Prepare Metadata |
| prepTaxaAbundanceData | Prepares Taxa Abundance Data for Association analysis |
| show.missing.by.variable | show.missing.by.variable |
| taxaPV | Calculate Proportional Variability For Taxa |
| test.ONE.association | Test one association |
| test.ONE.association.0 | Illustrate.ONE.association.BY.STRATUM |
| Wilson.interval | Wilson.interval |
