API for RJWANGbioinfo/APAlyzer
A toolkit for APA analysis using RNA-seq data
| Global functions | |
|---|---|
| .APA3_muti | Source code |
| .APAIPA_muti | Source code |
| .GTF2IPA | Source code |
| .GTF2LE | Source code |
| .GTF2refUTRraw | Source code |
| .REFIPA | Source code |
| .REFLE | Source code |
| .absMIN | Source code |
| .annotatePASRegion | Source code |
| .annotatePAS_V2 | Source code |
| .annotatePAS_legacy | Source code |
| .calDAbn | Source code |
| .calDRUD | Source code |
| .calDRUDIPA | Source code |
| .calIPADAbn | Source code |
| .calIPA_RE | Source code |
| .calsizeCUT | Source code |
| .calt_p | Source code |
| .calt_p_multiANOVA | Source code |
| .caltype | Source code |
| .caltype2 | Source code |
| .caltype3 | Source code |
| .caltype4 | Source code |
| .combine_count | Source code |
| .divxdb | Source code |
| .final_multigroupAPA | Source code |
| .final_tbl_3mutil | Source code |
| .final_tbl_3mutil2 | Source code |
| .final_tbl_3singl | Source code |
| .final_tbl_IPAmutil | Source code |
| .final_tbl_IPAmutil2 | Source code |
| .final_tbl_IPAsingl | Source code |
| .finaltype | Source code |
| .getALLPAS | Source code |
| .getIPAtbl | Source code |
| .getSPs | Source code |
| .getSUMsize | Source code |
| .getTEtbl | Source code |
| .get_strand_IPA | Source code |
| .getcount | Source code |
| .getname | Source code Source code |
| .getsize | Source code |
| .judge_rep | Source code |
| .simple_size | Source code |
| .trimCommon | Source code |
| .trimIPAraw | Source code |
| .trimIPAraw2 | Source code |
| APABox | Man page Source code |
| APAVolcano | Man page Source code |
| APAdiff | Man page Source code |
| GENEXP_CDS | Man page Source code |
| PAS2GEF | Man page Source code |
| PASEXP_3UTR | Man page Source code |
| PASEXP_IPA | Man page Source code |
| REF3UTR | Man page Source code |
| REF4PAS | Man page Source code |
| REFCDS | Man page Source code |
| ThreeMostPairBam | Man page Source code |
| download_testbam | Man page Source code |
