Files in RJWANGbioinfo/APAlyzer
A toolkit for APA analysis using RNA-seq data
.BBSoptions
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/APAPlots.R
R/APAdiff.R
R/APAlyzer.R
R/IPA_analysis.R
R/PAS2GEF.R
R/ThreeMostPairBam.R
README.md
_config.yml
inst/CITATION
inst/extdata/mm9.chr19.refGene.R.DB
inst/extdata/mm9_REF.RData
inst/extdata/mm9_TBX20.APAdiff_OUT.RData
inst/extdata/mm9_TBX20.APAout.RData
inst/extdata/mm9_tissues_rawout.RData
longtests/runTests.R
longtests/testthat/test_PAS2GEF.R
man/APABox.Rd
man/APAVolcano.Rd
man/APAdiff.Rd
man/GENEXP_CDS.Rd
man/PAS2GEF.Rd
man/PASEXP_3UTR.Rd
man/PASEXP_IPA.Rd
man/REF3UTR.Rd
man/REF4PAS.Rd
man/REFCDS.Rd
man/ThreeMostPairBam.Rd
man/download_testbam.Rd
tests/runTests.R
tests/testthat/test_APAPlots.R
tests/testthat/test_APAdiff.R
tests/testthat/test_APAlyzer.R
tests/testthat/test_IPA_analysis.R
tests/testthat/test_ThreeMostPairBam.R
vignettes/APAlyzer.Rmd
vignettes/APAlyzer.bib
vignettes/REDbox.png
vignettes/REDvoca.png
