Man pages for Rmomal/EMtree
Infers Direct Species Association Networks using Tree Averaging
| data_from_scratch | Simulates data under the PLN model with control on the... |
| draw_network | Plots a network |
| EdgeProba | Computing edge probabilities |
| EMtree | Core computing function |
| erdos | Simulates an Erdös-Renyi graph |
| FitBeta | Update the beta weights according to the gradient ascent |
| freq_selec | Computes edges selection frequency after resampling procedure |
| generator_graph | Simulate several types of graphs |
| generator_param | Generate simulation parameters from a graph adjacency matrix |
| generator_PLN | Simulate count data under the Poisson log-Normal model |
| Kirshner | Computing edge probabilities using Kirshner (07) formula |
| Laplacian | Compute a matrix Laplacian |
| Meila | Computing the M matrix |
| Psi_alpha | Choice of alpha for a numerically stable psi matrix |
| ResampleEMtree | Resampling procedure for edges probability |
| SimCluster | Simulates a cluster graph |
| SpannTree | Simulates a spanning tree graph from 'vegan'package |
| StATS | Stability Approach to Threshold Selection |
| SumTree | Summing over trees (Matrix Tree Theorem) |
| ToSym | Makes a symmetric matrix from the vector made of its upper... |
| ToVec | Makes a vector from the upper triangular part of a symmetric... |
