Files in RockefellerUniversity/GlossyBRC
DESCRIPTION
NAMESPACE
R/methods.R
inst/flat/glossary.csv
inst/flat/yaml_to_flat.Rmd
inst/flat/yaml_to_flat.html
inst/json/flat_to_json.Rmd
inst/json/flat_to_json.html
inst/json/glossary.json
inst/json/glossary2.json
inst/yaml/.DS_Store
inst/yaml/ATACseq_QC/Mapped_To_Mitochondria_Rate.yaml
inst/yaml/ATACseq_QC/Non_Redundant_Fraction.yaml
inst/yaml/ATACseq_QC/PBC_1.yaml
inst/yaml/ATACseq_QC/PBC_2.yaml
inst/yaml/ATACseq_QC/Proper_Pair_Rate.yaml
inst/yaml/ATACseq_QC/TSSE.yaml
inst/yaml/ChIPQC/Percent_Duplicated.yaml
inst/yaml/ChIPQC/Percent_Multimapping.yaml
inst/yaml/ChIPQC/Percent_Reads_in_Blacklist.yaml
inst/yaml/ChIPQC/Percent_Reads_in_Peaks.yaml
inst/yaml/ChIPQC/Predicted_Fragment_Length.yaml
inst/yaml/ChIPQC/Relative_Cross_Coverage.yaml
inst/yaml/ChIPQC/Standardized_Standard_Deviation.yaml
inst/yaml/ChIPQC/Standardized_Standard_Deviation_noBlacklist.yaml
inst/yaml/ChIP_ATAC_misc/blacklist.yaml
inst/yaml/ChIP_ATAC_misc/peak_calling.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/BAD_CYCLES.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/CATEGORY.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/MEAN_READ_LENGTH.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PCT_ADAPTER.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PCT_CHIMERAS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PCT_PF_READS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PCT_PF_READS_ALIGNED.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PCT_PF_READS_IMPROPER_PAIRS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PCT_READS_ALIGNED_IN_PAIRS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_ALIGNED_BASES.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_HQ_ALIGNED_BASES.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_HQ_ALIGNED_Q20_BASES.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_HQ_ALIGNED_READS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_HQ_ERROR_RATE.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_HQ_MEDIAN_MISMATCHES.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_INDEL_RATE.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_MISMATCH_RATE.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_NOISE_READS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_READS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_READS_ALIGNED.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/PF_READS_IMPROPER_PAIRS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/READS_ALIGNED_IN_PAIRS.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/STRAND_BALANCE.yaml
inst/yaml/Picard_AlignmentSummaryMetrics/TOTAL_READS.yaml
inst/yaml/Picard_RNASeqMetrics/CODING_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/CORRECT_STRAND_READS.yaml
inst/yaml/Picard_RNASeqMetrics/IGNORED_READS.yaml
inst/yaml/Picard_RNASeqMetrics/INCORRECT_STRAND_READS.yaml
inst/yaml/Picard_RNASeqMetrics/INTERGENIC_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/INTRONIC_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/MEDIAN_3PRIME_BIAS.yaml
inst/yaml/Picard_RNASeqMetrics/MEDIAN_5PRIME_BIAS.yaml
inst/yaml/Picard_RNASeqMetrics/MEDIAN_5PRIME_TO_3PRIME_BIAS.yaml
inst/yaml/Picard_RNASeqMetrics/MEDIAN_CV_COVERAGE.yaml
inst/yaml/Picard_RNASeqMetrics/NUM_R1_TRANSCRIPT_STRAND_READS.yaml
inst/yaml/Picard_RNASeqMetrics/NUM_R2_TRANSCRIPT_STRAND_READS.yaml
inst/yaml/Picard_RNASeqMetrics/NUM_UNEXPLAINED_READS.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_CODING_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_CORRECT_STRAND_READS.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_INTERGENIC_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_INTRONIC_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_MRNA_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_R1_TRANSCRIPT_STRAND_READS.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_R2_TRANSCRIPT_STRAND_READS.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_RIBOSOMAL_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_USABLE_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PCT_UTR_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PF_ALIGNED_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/PF_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/RIBOSOMAL_BASES.yaml
inst/yaml/Picard_RNASeqMetrics/UTR_BASES.yaml
inst/yaml/RNAseq_misc/Gene_ExonCounts.yaml
inst/yaml/RNAseq_misc/Genebody_Counts.yaml
inst/yaml/RNAseq_misc/Transcripts_Per_Million.yaml
inst/yaml/fastp_metrics/phred_fastq_quality_score.yaml
inst/yaml/feature_counts/.DS_Store
inst/yaml/feature_counts/Assigned.yaml
inst/yaml/feature_counts/Unassigned_Ambiguity.yaml
inst/yaml/feature_counts/Unassigned_Chimera.yaml
inst/yaml/feature_counts/Unassigned_Duplicate.yaml
inst/yaml/feature_counts/Unassigned_FragmentLength.yaml
inst/yaml/feature_counts/Unassigned_Junction.yaml
inst/yaml/feature_counts/Unassigned_MappingQuality.yaml
inst/yaml/feature_counts/Unassigned_MultiMapping.yaml
inst/yaml/feature_counts/Unassigned_NoFeatures.yaml
inst/yaml/feature_counts/Unassigned_Nonjunction.yaml
inst/yaml/feature_counts/Unassigned_Overlapping_Length.yaml
inst/yaml/feature_counts/Unassigned_Read_Type.yaml
inst/yaml/feature_counts/Unassigned_Secondary.yaml
inst/yaml/feature_counts/Unassigned_Singleton.yaml
inst/yaml/feature_counts/Unassigned_Unmapped.yaml
inst/yaml/genomic_file_formats/.DS_Store
inst/yaml/genomic_file_formats/GTF.yaml
inst/yaml/genomic_file_formats/bam.yaml
inst/yaml/genomic_file_formats/bigwig.yaml
inst/yaml/genomic_file_formats/fastq.yaml
inst/yaml/genomic_file_formats/reference_fasta.yaml
inst/yaml/other/.DS_Store
inst/yaml/other/ID_to_symbol_map.yaml
man/get_glossary.Rd
man/hello.Rd
man/list_categories.Rd
man/list_terms.Rd
