Files in SACEMA/inctools
Incidence Estimation Tools
.gitignore
.stickler.yml
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/calibration_frr.R
R/calibration_mdri.R
R/excalibdata.R
R/incidence.R
R/inctools.R
R/power.R
R/precision.R
README.md
_conda-forge/LICENSE
_conda-forge/README.md
_conda-forge/extra.yaml
_conda-forge/info.txt
_conda-forge/packages.txt
_conda-forge/r-inctools/bld.bat
_conda-forge/r-inctools/build.sh
_conda-forge/r-inctools/meta.yaml
_conda-forge/run.R
_conda-forge/run.py
_conda-forge/run.sh
_conda-forge/update.sh
_conda/create_env.sh
_conda/r-test-oldrel.yml
_conda/r-test-release.yml
_pkgdown.yml
_shiny/fabfile.py
_shiny/incidence_difference_calculator_beta/Incdiff_calc.R
_shiny/incidence_difference_calculator_beta/Incdiff_incprop_calc.R
_shiny/incidence_difference_calculator_beta/incidence_difference_calculator.html
_shiny/incidence_difference_calculator_beta/server.R
_shiny/incidence_difference_calculator_beta/ui.R
_shiny/incidence_difference_calculator_beta/www/SACEMA_logo.jpg
_shiny/incidence_difference_calculator_beta/www/mcgill.png
_shiny/incidence_prevalence_calculator_beta/Incidence_Prevalence_Calculator.html
_shiny/incidence_prevalence_calculator_beta/prev_inc_calc.R
_shiny/incidence_prevalence_calculator_beta/server.R
_shiny/incidence_prevalence_calculator_beta/ui.R
_shiny/incidence_prevalence_calculator_beta/www/SACEMA_logo.jpg
_shiny/incidence_prevalence_calculator_beta/www/mcgill.png
_shiny/pull_and_deploy_shiny.sh
_shiny/requirements.txt
_shiny/sample_size_baseline_and_cohort/FeiGao_SampleSizeRecencyTrial.pdf
_shiny/sample_size_baseline_and_cohort/recencyassay_code_FeiGao.R
_shiny/sample_size_baseline_and_cohort/rsconnect/shinyapps.io/incidence/sample_size_baseline_and_cohort.dcf
_shiny/sample_size_baseline_and_cohort/server.R
_shiny/sample_size_baseline_and_cohort/simulation_code_FeiGao.R
_shiny/sample_size_baseline_and_cohort/ss_baseline_cohort.R
_shiny/sample_size_baseline_and_cohort/test.R
_shiny/sample_size_baseline_and_cohort/ui.R
_shiny/sample_size_baseline_and_cohort/www/FIND_logo.jpg
_shiny/sample_size_baseline_and_cohort/www/SACEMA_logo.png
_shiny/sample_size_baseline_and_cohort/www/VRI_logo.png
_shiny/sample_size_calculator_1survey_beta/incidence_difference_calculator.R
_shiny/sample_size_calculator_1survey_beta/manifest.json
_shiny/sample_size_calculator_1survey_beta/plot_fcn.R
_shiny/sample_size_calculator_1survey_beta/sample_size_calc_v297.R
_shiny/sample_size_calculator_1survey_beta/server.R
_shiny/sample_size_calculator_1survey_beta/ui.R
_shiny/sample_size_calculator_1survey_beta/www/FIND_logo.jpg
_shiny/sample_size_calculator_1survey_beta/www/SACEMA_logo.jpg
_shiny/sample_size_calculator_1survey_beta/www/Table_example_one_survey.csv
_shiny/sample_size_calculator_2surveys_beta/manifest.json
_shiny/sample_size_calculator_2surveys_beta/plot_fcn.R
_shiny/sample_size_calculator_2surveys_beta/sample_size_calc_v297.R
_shiny/sample_size_calculator_2surveys_beta/server.R
_shiny/sample_size_calculator_2surveys_beta/test.R
_shiny/sample_size_calculator_2surveys_beta/ui.R
_shiny/sample_size_calculator_2surveys_beta/www/FIND_logo.jpg
_shiny/sample_size_calculator_2surveys_beta/www/SACEMA_logo.jpg
_shiny/sample_size_calculator_2surveys_beta/www/Table_example.csv
_shiny/sample_size_calculator_beta/manifest.json
_shiny/sample_size_calculator_beta/plot_fcn.R
_shiny/sample_size_calculator_beta/sample_size_calc_v297.R
_shiny/sample_size_calculator_beta/server.R
_shiny/sample_size_calculator_beta/ui.R
_shiny/sample_size_calculator_beta/www/FIND_logo.jpg
_shiny/sample_size_calculator_beta/www/SACEMA_logo.jpg
_shiny/sample_size_for_power_beta/sample_size_calc_v297.R
_shiny/sample_size_for_power_beta/sample_size_calculator.html
_shiny/sample_size_for_power_beta/server.R
_shiny/sample_size_for_power_beta/ui.R
_shiny/sample_size_for_power_beta/www/SACEMA_logo.jpg
_shiny/sample_size_for_power_beta/www/mcgill.png
_shiny/sample_size_for_precision/rsconnect/shinyapps.io/laminjuwara/sample_size_for_precision.dcf
_shiny/sample_size_for_precision/rse_calc_ss_v297.R
_shiny/sample_size_for_precision/sample_size_calculator.html
_shiny/sample_size_for_precision/server.R
_shiny/sample_size_for_precision/ui.R
_shiny/sample_size_for_precision/www/SACEMA_logo.jpg
_shiny/sample_size_for_precision/www/mcgill.png
codecov.yml
cran-comments.md
data/excalibdata.RData
docs/404.html
docs/articles/EstimatingIncidence.html
docs/articles/EstimatingIncidence_files/header-attrs-2.7/header-attrs.js
docs/articles/Introduction.html
docs/articles/Introduction_files/header-attrs-2.7/header-attrs.js
docs/articles/SurveyDesign.html
docs/articles/SurveyDesign_files/header-attrs-2.7/header-attrs.js
docs/articles/TestCalibration.html
docs/articles/TestCalibration_files/figure-html/unnamed-chunk-3-1.png
docs/articles/TestCalibration_files/figure-html/unnamed-chunk-5-1.png
docs/articles/TestCalibration_files/header-attrs-2.7/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/excalibdata.html
docs/reference/frrcal.html
docs/reference/inccounts.html
docs/reference/incpower.html
docs/reference/incprecision.html
docs/reference/incprops.html
docs/reference/inctools.html
docs/reference/index.html
docs/reference/mdrical-1.png
docs/reference/mdrical.html
docs/reference/prevcounts.html
inctools.Rproj
julia/Incidence.jl
julia/test.jl
man/excalibdata.Rd
man/frrcal.Rd
man/inccounts.Rd
man/incpower.Rd
man/incprecision.Rd
man/incprops.Rd
man/inctools.Rd
man/mdrical.Rd
man/prevcounts.Rd
tests/testthat.R
tests/testthat/test-inctools.R
vignettes/EstimatingIncidence.R
vignettes/EstimatingIncidence.Rmd
vignettes/EstimatingIncidence.html
vignettes/Introduction.Rmd
vignettes/Introduction.html
vignettes/SurveyDesign.R
vignettes/SurveyDesign.Rmd
vignettes/SurveyDesign.html
vignettes/TestCalibration.R
vignettes/TestCalibration.Rmd
vignettes/TestCalibration.html
vignettes/vignette_notes.Rmd_
