Files in SFUStatgen/LDheatmap
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
.Rbuildignore
DESCRIPTION
NAMESPACE
R/CEUDataRd.R
R/CHBJPTDataRd.R
R/GIMAP5CEUrd.R
R/GIMAP5Rd.R
R/LDheatmap-internal.R
R/LDheatmap-package.R
R/LDheatmap.R
R/LDheatmap.addGenes.R
R/LDheatmap.addGrob.R
R/LDheatmap.addRecombRate.R
R/LDheatmap.addScatterplot.R
R/LDheatmap.highlight.R
R/LDheatmap.marks.R
R/LDheatmap.moveGenemap.R
R/LDheatmapHelpers.R
R/RcppExports.R
R/import.R
R/plotGenes.R
R/recombRate.R
R/utils.R
R/vcfR2SnpMatrix.R
README.Rmd
_pkgdown.yaml
data-raw/CEUData.R
data-raw/CHBJPTData.R
data-raw/hapmapCEU.txt
data-raw/hapmapCHB.txt
data-raw/hapmapJPT.txt
data/CEUDist.rda
data/CEUSNP.rda
data/CHBJPTDist.rda
data/CHBJPTSNP.rda
data/GIMAP5.CEU.RData
data/GIMAP5.RData
demo/00Index
demo/LDheatmap.R
docs/articles/index.html
docs/articles/vcfOnLDheatmap.html
docs/articles/vcfOnLDheatmap_files/figure-html/unnamed-chunk-3-1.png
docs/articles/vcfOnLDheatmap_files/figure-html/unnamed-chunk-3-2.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CEUData.html
docs/reference/CHBJPTData-1.png
docs/reference/CHBJPTData.html
docs/reference/GIMAP5-1.png
docs/reference/GIMAP5.CEU-1.png
docs/reference/GIMAP5.CEU.html
docs/reference/GIMAP5.html
docs/reference/GIMAP5CEU-1.png
docs/reference/GIMAP5CEU.html
docs/reference/LDheatmap-1.png
docs/reference/LDheatmap-10.png
docs/reference/LDheatmap-11.png
docs/reference/LDheatmap-12.png
docs/reference/LDheatmap-13.png
docs/reference/LDheatmap-14.png
docs/reference/LDheatmap-15.png
docs/reference/LDheatmap-16.png
docs/reference/LDheatmap-17.png
docs/reference/LDheatmap-2.png
docs/reference/LDheatmap-3.png
docs/reference/LDheatmap-4.png
docs/reference/LDheatmap-5.png
docs/reference/LDheatmap-6.png
docs/reference/LDheatmap-7.png
docs/reference/LDheatmap-8.png
docs/reference/LDheatmap-9.png
docs/reference/LDheatmap-internal.html
docs/reference/LDheatmap.addGenes.html
docs/reference/LDheatmap.addGrob-1.png
docs/reference/LDheatmap.addGrob-2.png
docs/reference/LDheatmap.addGrob.html
docs/reference/LDheatmap.addRecombRate.html
docs/reference/LDheatmap.addScatterplot-1.png
docs/reference/LDheatmap.addScatterplot-2.png
docs/reference/LDheatmap.addScatterplot.html
docs/reference/LDheatmap.highlight-1.png
docs/reference/LDheatmap.highlight.html
docs/reference/LDheatmap.html
docs/reference/LDheatmap.marks-1.png
docs/reference/LDheatmap.marks.html
docs/reference/figures/logo.png
docs/reference/index.html
docs/reference/plotGenes.html
docs/reference/recombRate.html
docs/sitemap.xml
inst/CITATION
inst/ChangeLog
man/CEUSNP.Rd
man/CHBJPTSNP.Rd
man/GIMAP5.CEU.Rd
man/GIMAP5.Rd
man/LDheatmap-internal.Rd
man/LDheatmap.Rd
man/LDheatmap.addGenes.Rd
man/LDheatmap.addGrob.Rd
man/LDheatmap.addRecombRate.Rd
man/LDheatmap.addScatterplot.Rd
man/LDheatmap.highlight.Rd
man/LDheatmap.marks.Rd
man/figures/logo.png
man/plotGenes.Rd
man/recombRate.Rd
man/vcfR2SnpMatrix.Rd
src/.gitignore
src/GT_to_SnpMatrix.cpp
src/RcppExports.cpp
vignettes/1KG_sample_info.csv
vignettes/LDheatmap.Rnw
vignettes/LDheatmap.bib
vignettes/gTree.pdf
vignettes/jsslogo.jpg
vignettes/snp_id_dist.csv
vignettes/snp_in_vcf.vcf
vignettes/vcfOnLDheatmap.Rmd
