Man pages for SFUStatgen/LDheatmap
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
| CEUSNP | Example data set for LDheatmap |
| CHBJPTSNP | Example of data set for LDHeatmap |
| GIMAP5 | Example data set for LDHeatmap |
| GIMAP5.CEU | Example data set for LDheatmap |
| LDheatmap | This function produces a pairwise LD plot. |
| LDheatmap.addGenes | Add gene plot to an LDheatmap object. |
| LDheatmap.addGrob | Add a graphical object to an LDheatmap plot |
| LDheatmap.addRecombRate | Add recombination rate plot to an LD heat map. |
| LDheatmap.addScatterplot | Add a scatter plot to an LDheatmap object |
| LDheatmap.highlight | Highlight a genetic region in the linkage disequilibrium heat... |
| LDheatmap-internal | Internal LDheatmap functions and data files |
| LDheatmap.marks | Plots a symbol in the centers of cells of the heat map image |
| plotGenes | Plot genes from a specified region of the human genome. |
| recombRate | Produce recombination rate plot. |
| vcfR2SnpMatrix | Extract genotype information from a vcfR object |
