| AddHoleToPolygon | Add holes into Polygons 'AddHoleToPolygon' |
| AerodynamicResistance | Aerodynamic Resistance. Eq 4.2.25 in David R Maidment,... |
| AirDensity | Air Density, Eq 4.2.4 in David R Maidment, Handbook of... |
| autoBuildModel | Automatically run SHUDgis based on the input data and... |
| BasicPlot | Read multiply SHUD model output files and do time-series plot |
| BC | Generate the default Boundary Condition 'BC' |
| BulkSurfaceResistance | Bulk Surface Resistance, Eq 4.2.22 in David R Maidment,... |
| CanopyResistance | Canopy resistance 'CanopyResistance' |
| CommonPoints | Find the common coordinates in two groups of coordinates. |
| compareMaps | Plot multiple maps 'compareMaps' |
| correctRiverSlope | Convert the bed slope of river, to avoid negative/zero slope... |
| count | Count the frequency of numbers 'count' |
| crs.Albers | Build an Albers Equal Area projection based on the spatial... |
| crs.Lambert | Build a Lambert Equal Area projection based on the spatial... |
| crs.long2utm | Get UTM projection parameters in CRS, from longtitude and... |
| crs.long2utmZone | Get UTM zone frome longitutde 'crs.long2utmZone' |
| datafilter.riv | Filter the river data with a filter 'datafilter.riv' |
| days_in_year | Number of days in years. |
| DeltaS | Calculate the Change of Storage. 'DeltaS' |
| dot-shud | This is .shud environment. |
| Eudist | Eudilic Distance 'Eudist' |
| extractCoords | extract Coordinates of SpatialLines or SpatialPolygons... |
| extractRaster | Extract values on Raster map. The line is a straight line... |
| fdc | Default Comparison of the observation and simulation 'fdc' |
| fishnet | Generatue fishnet 'fishnet' Generate fishnet by the... |
| ForcingCoverage | Generate the coverage map for forcing sites.... |
| FromToNode | return the FROM and TO nodes index of the SpatialLines... |
| getAquiferDepth | Calculate the AquiferDepth of mesh cells 'getAquiferDepth' |
| getArea | Calculate the area of the cells 'getArea' |
| getCentroid | Get the centroids of the cells 'getCentroid' |
| getElevation | Calculate the elevation of mesh cells 'getElevation' |
| getLakeEleID | Get the Lake Element Index 'getLakeEleID' |
| getOutlets | Get outlet ID(s) 'getOutlets' |
| getRiverNodes | Get the From/To nodes of the river. 'getRiverNodes' |
| getVertex | Calculate the Vertex of the cells 'getVertex' |
| grid.subset | Find the subset of a extent in a grid. 'grid.subset' |
| highlight_id | Highlight elements with id. 'highlight_id' |
| hydrograph | Plot hydrograph 'hydrograph' |
| LAI2hc | Calculate vegetation height from Leaf Area Index (LAI), Eq... |
| LaiRf.GLC | Generate the default LAI and Roughness Length for USGS GLC... |
| LaiRf.NLCD | Generate the default LAI and Roughness Length 'LaiRf.NLCD' |
| LatentHeat | Latent Heat, Eq 4.2.1 in David R Maidment, Handbook of... |
| lc_EQ | convert equation from Univeristy of Marryland classes to NLCD... |
| lc.GLC | The default land cover parameters from USGS GLC 'lc.GLC' |
| lc.NLCD | Generate the default land cover parameters of NLCD classes.... |
| lc.UMD | The default land cover parameters from UMD 'lc.UMD' |
| LineFit | Linefit the observation and simulation 'LineFit' |
| loaddata | Read multiply SHUD model output files |
| map2d | Raster plot the mesh data 'map2d' |
| MeltFactor | Generate the default melt factor 'MeltFactor' |
| MeshAtt | Summary of the attributions on Mesh 'MeshAtt' |
| MeshData2Raster | SpatialData to Raster 'MeshData2Raster' |
| meshSinks | Get the Sink cells in SHUD mesh 'meshSinks' |
| ModelInfo | Summary of the basic information of model input data.... |
| NLCD.colors | Return NLCD colors. 'NLCD.colors' |
| NLCD.names | Return NLCD class names. 'NLCD.names' |
| NodeIDList | return the Index of nodes in SpatialData 'NodeIDList' |
| PET_PM | Potential Evapotranspiration with Pennmann-Monteith equation.... |
| plot_animate | Plot animation maps 'plot.animate' |
| plot_sp | Plot SpatialPolygons maps 'plot.sp' |
| plot_tsd | Plot xts data.. 'plot_tsd' |
| png.control | Prepare png figure out. 'png.control' |
| PointInDistance | Find the points in distance less than tol. 'PointInDistance' |
| polygonArea | Calculate the Polygon Area; |
| PressureElevation | Air pressure at the elevation, Allen(1998) Eq(7)... |
| ProjectCoordinate | Re-project coordinates betwen GCS and PCS 'ProjectCoordinate' |
| PsychrometricConstant | Psychrometric Constant, Eq 4.2.1 in David R Maidment,... |
| PTF | Pedotransfer function to generate soil/geol parameter from... |
| PTF.geol | Pedotransfer function to generate soil parameter 'PTF.geol' |
| PTF.soil | Pedotransfer function to generate soil parameter 'PTF.soil' |
| QvsO | Default Comparison of the observation and simulation 'QvsO' |
| rcpp_hello_world | Simple function using Rcpp |
| readatt | Read the .att file 'readmesh' |
| readcalib | Read the .calib file 'readcalib' |
| readconfig | Read the configuration (.para, .calib) file 'readconfig' |
| read.df | Read the matrix or data.frame file which has (nrow, ncol) in... |
| readforc.csv | Read the .csv files in .forc file 'readforc.csv' |
| readforc.fn | Read the .forc file 'readlc' |
| readgeol | Read the .geol file 'readgeol' |
| readic | Read the .ic file 'readic' |
| readlai | Read the .ts.lai Time-Series file 'readlai' |
| readlc | Read the .lc file 'readlc' |
| readmesh | Read the .mesh file 'readmesh' |
| readnc | Read the time tage from NC file. |
| readnc.time | Read the time tage from NC file. |
| readout | Read output file from SHUD model |
| readout.header | Read header information of output file |
| readpara | Read the .para file 'readpara' |
| readriv | Read the .riv file 'readriv' |
| readrivseg | Read the .rivseg file 'readrivseg' |
| readriv.sp | Read the river shapefile 'readriv.sp' |
| readsoil | Read the .soil file 'readsoil' |
| read.tsd | Read the time-series file, which has c(nrow, ncol,... |
| removeholes | Remove the holes in polygons 'removeholes' |
| RiverAtt | Summary of the attributions on Rivers 'RiverAtt' |
| RiverLength | Calculate the river length 'RiverLength' |
| RiverSlope | Calculate the river slope 'RiverSlope' |
| RiverType | parameters for river types 'RiverType' |
| rmDuplicatedLines | Remove the duplicated lines, which means the FROM and TO... |
| rowMatch | Identify whether every row of x is same as m; |
| sac | This is data of one of sub-catchmetn in Sacramento Watershed... |
| sh | This is data to be included in my package |
| SharedPoints | Find Shared points in SpatialLine* 'SharedPoints' |
| shud.att | extract Coordinates of SpatialLines or SpatialPolygons... |
| shud.calib | Generate the default model calibration 'shud.calib' |
| shud.env | Setup .shud environment. 'shud.env' |
| shud.filein | Prepare Input file of SHUD model 'shud.filein' |
| shud.ic | extract Coordinates of SpatialLines or SpatialPolygons... |
| shud.mask | Generate the raster mask of Mesh domain 'shud.mask' |
| shud.mesh | Generate the mesh data from the triangulation 'shud.mesh' |
| shud.para | Generate the default model configuration 'shud.para' |
| shud.river | calculate river order, downstream, slope and length... |
| SHUD-River-class | Class of SHUD.RIVER 'SHUD.RIVER' |
| shud.rivseg | Generate the river segments table 'shud.rivseg' |
| SHUDtoolbox-package | A short title line describing what the package does |
| shud.triangle | Generate triangle mesh domain 'shud.triangle' |
| SimpleSpatial | Simplify SpatialData. |
| SimplifybyLen | Simplify Polylines by length 'SimplifybyLen' |
| SinglePolygon | Conver the MULTIPOLYGONS to SINGLEPOLYGONS. |
| SlopeSatVaporPressure | Slope of saturated vapor pressure, Eq 4.2.3 in David R... |
| sp2PSLG | Convert SpatialLines or SpatialPolygons a Planar Straight... |
| sp2raster | SpatialData to Raster 'sp2raster' |
| sp.CutSptialLines | Cut sptialLines with threshold. 'sp.CutSptialLines' |
| sp.mesh2Shape | Convert the .mesh file to shapefile. 'sp.mesh2Shape' |
| sp.riv2shp | Convert the SHUD.RIVER class to SpatialLines 'sp.riv2shp' |
| sp.RiverDown | determine index of downstream 'sp.RiverOrder' |
| sp.RiverOrder | calculate river order 'sp.RiverOrder' |
| sp.RiverPath | determine River path, disolve the river network based on... |
| sp.RiverSeg | Cut the river by shud.mesh 'sp.RiverSeg' |
| sp.simplifyLen | Simplify Polylines by length 'sp.simplifyLen' |
| sp.Tri2Shape | Generate triangle mesh domain 'sp.Tri2Shape' |
| sunapee | This is data of Lake Sunappe to be included in my package |
| toCentroid | Find the centroid of the triangles 'toCentroid' |
| Tri2Centroid | Centroids of the triangulation 'Tri2Centroid' |
| triTopology | Determine the topological relation among triangles. |
| ts2Daily | Convert the time-series data to daily data. |
| ts2df | Convert Time-Series data to data.frame 'ts2df' |
| ts2map | Plot map of time-series data 'ts2map' |
| tsLaiRf | Generate the default LAI and Roughness Length for UMD... |
| Untructure-Domain-class | Class of SHUD.MESH 'SHUD.MESH' |
| VaporPressure_Act | Actual vapor pressure 'VaporPressure_Act' |
| VaporPressure_Sat | Saturated vapor pressure, Eq 4.2.2 in David R Maidment,... |
| voronoipolygons | Generate Thiesson Polygons from a point data... |
| watershedDelineation | Do Watershed Delineation 'watershedDelineation' |
| wb.all | Calculate the water balance 'wb.all' |
| wb.DS | Calculate the Change of Storage. 'wb.DS' |
| wb.ele | Calculate the water balance 'wb.ele' |
| wb.lake | Calculate the Change of Storage. 'wb.lake' |
| wb.riv | Calculate the water balance 'wb.riv' |
| which_outliers | Find the outliers in a dataset 'which_outliers' |
| WindProfile | Calculate windspeed at Zx heights. 'WindProfile' |
| write.config | Write SHUD configuration files (.para, .calib, etc.) |
| write.df | Write data.frame out into file 'write.df' |
| write.forc | Write SHUD .forc file 'write.forc' |
| write.ic | Write SHUD .ic file 'writeinit' |
| write.mesh | Write .mesh file 'write.mesh' |
| write.riv | Write SHUD .mesh file 'writemesh' |
| writeshape | Write ESRI shapefile out 'writeshape' |
| write.tsd | Write xts data out into file 'write.tsd' |
| write.xts | Write xts data out into file 'write.xts' |
| xy2ID | Convert the 'xy' (X,Y) into Index in 'coords' 'xy2ID' |
| xy2shp | Generate a shapefile from coordinates. 'xy2shp' |
| xyz2Raster | Read the time tage from (x, y, matrix). |
