Man pages for SONGDONGYUAN1994/PseudotimeDE
Inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data
| isProbVector | Check if Vector of Probabilities |
| LPS_ori_tbl | A tibble containing the inferred pseudotime of 'LPS_sce' by... |
| LPS_sce | A SingelCellExperiment dataset containing 4,016 genes and 390... |
| LPS_sub_tbl | A list of tibbles containing the inferred pseudotime of each... |
| plotCurve | Plot the Fitted Model (Gene Trajectory) |
| plotUncertainty | Plot the Pseudotime of Subsamples |
| pMixHoeffInd | Null asymptotic distribution of t* in the mixed case |
| pseudotimeDE | Perform Differential Expression Test on One Gene |
| runPseudotimeDE | Perform Differential Expression Test on a List of Genes |
| runTauStarDE | Perform Differential Expression Test by tauStar on a List of... |
| tauStarDE | Perform Differential Expression Test by tauStar on One Gene |
| tauStarTest | Test of Independence Using the Tau* Measure |
| tStar | Computing t* |
