Man pages for SPATIAL-Lab/NEONiso
Tools to Calibrate and Work with NEON Atmospheric Isotope Data
| calculate_12CO2 | Calculate 12C-CO2 Mole Fractions |
| calculate_13CO2 | Calculate 13C-CO2 Mole Fractions |
| calibrate_ambient_carbon_gainoffset | Calibrate ambient carbon isotope data using gain-and-offset... |
| calibrate_ambient_carbon_linreg | Calibrate ambient carbon isotope data using linear regression |
| calibrate_ambient_water_linreg | calibrate_ambient_water_isotopes |
| calibrate_carbon | Calibrate NEON carbon isotope data using validation data... |
| calibrate_water | Calibrate NEON water isotope ratios using validation data... |
| carbon_regression_plots | Make plots of carbon calibration data for debugging |
| convert_NEONhdf5_to_POSIXct_time | Convert NEON HDF5 file time to POSIXct |
| convert_POSIXct_to_NEONhdf5_time | Convert a POSIXct object to the format used in NEON HDF5... |
| correct_carbon_ref_cval | correct_carbon_ref_cval |
| correct_carbon_ref_output | Correct carbon ref output |
| delta_to_R | Converts delta value to heavy-to-light isotope ratio |
| estimate_calibration_error | Produce estimates of the calibration error. |
| extract_carbon_cal_data | Extract only the data corresponding to validation/calibration... |
| extract_water_calibration_data | Extract only the data corresponding to validation/calibration... |
| filter_median_brock86 | Apply a median absolute deviation filter |
| fit_carbon_regression | Estimate slope/intercept of carbon isotope calibration... |
| fit_water_regression | Estimate slope/intercept of water isotope calibration... |
| get_Rstd | Return heavy-to-light isotope ratio of primary standard. |
| ingest_data | Ingest and stack variables needed in calibration. |
| loocv | Leave-one-out cross validation |
| manage_local_EC_archive | Manage a local eddy covariance (EC) data archive. |
| NEONiso-package | NEONiso |
| restructure_carbon_variables | Restructure ingested variables for the carbon isotope system. |
| restructure_variables | Restructures data.frames imported by ingest_data to shorten... |
| restructure_water_variables | Restructure ingested variables for the water isotope system. |
| R_to_delta | Convert heavy-to-light isotope ratio to delta values. |
| select_daily_reference_data | Select validation data corresponding to a particular day |
| setup_output_file | Structure a new HDF5 file |
| swap_standard_isotoperatios | swap_standard_isotoperatios |
| terrestrial_core_sites | List terrestrial core sites |
| terrestrial_gradient_sites | List terrestrial gradient sites |
| validate_analyte | Standardize analyte names |
| validate_output_file | Validate output file. |
| water_isotope_sites | List sites with water vapor isotope ratios. |
| write_carbon_ambient_data | Write calibrated carbon ambient data to file |
| write_carbon_calibration_data | Write carbon calibrations to file |
| write_water_ambient_data | Write calibrated ambient water isotope ratio observations to... |
| write_water_calibration_data | Write water calibration parameters to file |
