Man pages for SamLoontjens/HandlingLicorFiles
Handling LI-6400 and LI-6800 output files
| analyse_licorfile | A function that analyses a licorfile for visual examination |
| calculate_all_light_response_parameters | A function that calculates all light response curve... |
| calculate_all_photosynthetic_induction_parameters | A function that calculates all photosynthetic induction... |
| calculate_light_induction_parameters | A function that calculates the light incuction parameters of... |
| calculate_light_response_parameters | A function that calculates all light response curve... |
| calculate_photosynthetic_induction_parameters | A function that calculates all photosynthetic induction... |
| create_directories | Create directories where you can drop files for analysis. |
| extract_parameters | A function that extracts desired parameters from a dataframe. |
| fit_A_Ci_curve | A function that fits A/Ci curve. |
| fit_any_curve | A function that fits any curve with nls. |
| fit_light_response_curve | A function that fits a light response curve. |
| fit_multiple_curves | A function that fits multiple curves with nls. |
| fit_photosynthetic_decay_A_curve | A function that fits A of a photosynthetic decay. |
| fit_photosynthetic_decay_Ci_curve | A function that fits Ci of a photosynthetic decay. |
| fit_photosynthetic_induction_A_complex_curve | A function that fits A of a photosynthetic induction. |
| fit_photosynthetic_induction_A_curve | A function that fits A of a photosynthetic induction. |
| fit_photosynthetic_induction_A_multiple_curves | A function that fits multiple curves for A of a... |
| fit_photosynthetic_induction_Ci_curve | A function that fits Ci of a photosynthetic induction. |
| guide | A function that prints a guide of this package for the user. |
| hello | Hello, world! |
| install_load_packages | A function that installs packages. |
| is_single_string | A function checks if the input is a single string. |
| list_licorfiles | A function that lists the licorfiles in the input directory |
| moving_average | A function that calculates a moving average of a column or... |
| normalize_column | A function that normalizes one column. |
| numeric_dataframe | A function that changes all columns of a dataframe to... |
| read_licorfile | A function that reads a licorfile. |
| read_licorfile_6400 | A function that reads a 6400 licorfile. |
| read_licorfile_6800 | A function that reads a 6800 licorfile. |
| round_light | A function that rounds the Qin of a dataframe. |
| round_parameter | A function that rounds one column or vector. |
| say_hi | A function to say hi to Sam. |
| split_filepath | A function that splits a filepath. |
| split_licor_filename | A function that splits a filename of a licorfile. |
| startup | A function that runs the reccomended functions before... |
| summarise_photosynthetic_induction_data | A function that combines and summarises photosynthetic... |
| unique_dataframe_names | A function that renames duplicate dataframe column names |
