Files in ScottishCovidResponse/hdf5processing

Functions to Interact with the 'FAIR Data Pipeline'

LICENSE.md NEWS.md R/add_read.R R/add_write.R R/check_config.R R/check_dataproduct_exists.R R/check_datetime.R R/check_exists.R R/check_field.R R/check_fields.R R/check_handle.R R/check_integer.R R/check_local_repo.R R/check_string.R R/check_table_exists.R R/check_yaml_write.R R/class-fdp.R R/clean_query.R R/create_config.R R/create_index.R R/create_version_number.R R/download_from_database.R R/download_from_url.R R/extract_id.R R/fair_init.R R/fair_run.R R/fdp_resolve_read.R R/fdp_resolve_write.R R/finalise.R R/find_read_match.R R/find_write_match.R R/findme.R R/get_author_url.R R/get_components.R R/get_dataproduct.R R/get_entity.R R/get_entry.R R/get_existing.R R/get_fields.R R/get_file_hash.R R/get_github_hash.R R/get_id.R R/get_index.R R/get_max_version.R R/get_storage_location.R R/get_table_optional.R R/get_table_queryable.R R/get_table_readable.R R/get_table_required.R R/get_table_writable.R R/get_tables.R R/get_token.R R/get_url.R R/github_files.R R/globals.R R/increment_filename.R R/initialise.R R/is_queryable.R R/link_read.R R/link_write.R R/new_author.R R/new_code_repo_release.R R/new_code_run.R R/new_data_product.R R/new_external_object.R R/new_file_type.R R/new_issue.R R/new_keyword.R R/new_licence.R R/new_namespace.R R/new_object.R R/new_object_component.R R/new_quality_controlled.R R/new_storage_location.R R/new_storage_root.R R/new_user_author.R R/paper_exists.R R/patch_data.R R/post_data.R R/rDataPipeline-package.R R/raise_issue.R R/raise_issue_config.R R/raise_issue_repo.R R/raise_issue_script.R R/random_hash.R R/read_array.R R/read_distribution.R R/read_estimate.R R/read_table.R R/register_issue_dataproduct.R R/register_issue_script.R R/remove_empty_parents.R R/resolve_read.R R/resolve_version.R R/resolve_write.R R/validate_fields.R R/write_array.R R/write_distribution.R R/write_estimate.R R/write_table.R README.md man/add_read.Rd man/add_write.Rd man/check_config.Rd man/check_dataproduct_exists.Rd man/check_datetime.Rd man/check_exists.Rd man/check_field.Rd man/check_fields.Rd man/check_handle.Rd man/check_integer.Rd man/check_local_repo.Rd man/check_string.Rd man/check_table_exists.Rd man/check_yaml_write.Rd man/clean_query.Rd man/create_config.Rd man/create_index.Rd man/create_version_number.Rd man/download_from_database.Rd man/download_from_url.Rd man/extract_id.Rd man/fair_init.Rd man/fair_run.Rd man/fdp-class.Rd man/fdp_resolve_read.Rd man/fdp_resolve_write.Rd man/finalise.Rd man/find_read_match.Rd man/find_write_match.Rd man/findme.Rd man/get_author_url.Rd man/get_components.Rd man/get_dataproduct.Rd man/get_entity.Rd man/get_entry.Rd man/get_existing.Rd man/get_fields.Rd man/get_file_hash.Rd man/get_github_hash.Rd man/get_id.Rd man/get_index.Rd man/get_max_version.Rd man/get_storage_location.Rd man/get_table_optional.Rd man/get_table_queryable.Rd man/get_table_readable.Rd man/get_table_required.Rd man/get_table_writable.Rd man/get_tables.Rd man/get_token.Rd man/get_url.Rd man/github_files.Rd man/increment_filename.Rd man/initialise.Rd man/is_queryable.Rd man/link_read.Rd man/link_write.Rd man/new_author.Rd man/new_code_repo_release.Rd man/new_code_run.Rd man/new_data_product.Rd man/new_external_object.Rd man/new_file_type.Rd man/new_issue.Rd man/new_keyword.Rd man/new_licence.Rd man/new_namespace.Rd man/new_object.Rd man/new_object_component.Rd man/new_quality_controlled.Rd man/new_storage_location.Rd man/new_storage_root.Rd man/new_user_author.Rd man/paper_exists.Rd man/patch_data.Rd man/post_data.Rd man/rDataPipeline-package.Rd man/raise_issue.Rd man/raise_issue_config.Rd man/raise_issue_repo.Rd man/raise_issue_script.Rd man/random_hash.Rd man/read_array.Rd man/read_distribution.Rd man/read_estimate.Rd man/read_table.Rd man/register_issue_dataproduct.Rd man/register_issue_script.Rd man/remove_empty_parents.Rd man/resolve_read.Rd man/resolve_version.Rd man/resolve_write.Rd man/validate_fields.Rd man/write_array.Rd man/write_distribution.Rd man/write_estimate.Rd man/write_table.Rd software-checklist.md tests/testthat.R tests/testthat/test__multiple_coderuns.R tests/testthat/test__multiple_versions.R tests/testthat/test__output_globbing.R tests/testthat/test__use_block.R tests/testthat/test__works_with_pipes.R tests/testthat/test__write_files_with_same_hash.R tests/testthat/test_check_datetime.R tests/testthat/test_check_exists.R tests/testthat/test_check_integer.R tests/testthat/test_check_table_exists.R tests/testthat/test_clean_query.R tests/testthat/test_create_version_number.R tests/testthat/test_finalise.R tests/testthat/test_find_read_match.R tests/testthat/test_findme.R tests/testthat/test_get_components.R tests/testthat/test_get_entity.R tests/testthat/test_get_entry.R tests/testthat/test_get_existing.R tests/testthat/test_get_fields.R tests/testthat/test_get_file_hash.R tests/testthat/test_get_tables.R tests/testthat/test_initialise.R tests/testthat/test_link_read.R tests/testthat/test_link_write.R tests/testthat/test_new_author.R tests/testthat/test_new_code_repo_release.R tests/testthat/test_new_code_run.R tests/testthat/test_new_data_product.R tests/testthat/test_new_external_object.R tests/testthat/test_new_issue.R tests/testthat/test_new_keyword.R tests/testthat/test_new_namespace.R tests/testthat/test_new_object.R tests/testthat/test_new_object_component.R tests/testthat/test_new_storage_location.R tests/testthat/test_post_data.R tests/testthat/test_raise_issue.R tests/testthat/test_read_array.R tests/testthat/test_read_distribution.R tests/testthat/test_read_estimate.R tests/testthat/test_read_table.R tests/testthat/test_validate_fields.R tests/testthat/test_write_array.R tests/testthat/test_write_distribution.R tests/testthat/test_write_estimate.R tests/testthat/test_write_table.R