ScribnerLab/SeaLampreyRapture

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NAMESPACE
R/brd.mat.functions.R R/coancestry.R R/colony.sim.create.R README.Rmd README.md
SeaLampreyRapture.Rproj
analysis/Population genetics/DAPC.R analysis/Population genetics/geneticDiversityFst.R analysis/Population genetics/outlierAnalysis.R analysis/README.Rmd analysis/README.md
analysis/README_files/figure-markdown_strict/unnamed-chunk-10-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-11-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-3-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-4-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-5-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-6-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-7-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-8-1.png
analysis/README_files/figure-markdown_strict/unnamed-chunk-9-1.png
analysis/bRAD_flip_trim.pl
analysis/buildRDA.R analysis/installPackages.R
analysis/lamprey_rapture_pipeline.sh
analysis/outlierTable.pdf
analysis/outlierTable.png
analysis/pedigrees/Real pedigree data/brd.matrix.figure.R analysis/pedigrees/Real pedigree data/dck_2_location.heat.map.R analysis/pedigrees/Real pedigree data/dck_2_location.randomization.all.ages.R analysis/pedigrees/Real pedigree data/exact.tests.R analysis/pedigrees/Real pedigree data/pedigree.stats.R
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_1.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_10.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_100.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_11.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_12.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_13.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_14.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_15.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_16.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_17.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_18.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_19.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_2.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_20.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_21.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_22.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_23.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_24.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_25.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_26.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_27.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_28.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_29.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_3.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_30.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_31.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_32.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_33.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_34.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_35.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_36.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_37.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_38.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_39.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_4.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_40.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_41.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_42.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_43.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_44.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_45.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_46.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_47.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_48.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_49.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_5.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_50.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_51.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_52.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_53.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_54.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_55.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_56.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_57.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_58.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_59.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_6.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_60.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_61.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_62.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_63.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_64.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_65.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_66.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_67.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_68.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_69.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_7.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_70.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_71.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_72.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_73.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_74.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_75.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_76.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_77.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_78.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_79.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_8.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_80.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_81.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_82.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_83.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_84.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_85.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_86.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_87.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_88.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_89.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_9.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_90.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_91.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_92.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_93.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_94.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_95.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_96.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_97.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_98.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/alf_dist/alf.dist_sim_99.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_1.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_10.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_100.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_11.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_12.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_13.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_14.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_15.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_16.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_17.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_18.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_19.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_2.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_20.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_21.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_22.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_23.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_24.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_25.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_26.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_27.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_28.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_29.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_3.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_30.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_31.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_32.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_33.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_34.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_35.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_36.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_37.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_38.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_39.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_4.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_40.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_41.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_42.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_43.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_44.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_45.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_46.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_47.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_48.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_49.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_5.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_50.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_51.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_52.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_53.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_54.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_55.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_56.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_57.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_58.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_59.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_6.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_60.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_61.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_62.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_63.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_64.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_65.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_66.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_67.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_68.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_69.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_7.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_70.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_71.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_72.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_73.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_74.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_75.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_76.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_77.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_78.txt
analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/breeding_matrices/mating_matrix_sim_79.txt
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analysis/pedigrees/Simulations/Create simulations/Output/sims/Npar10_Nloci100/simulation.information.txt
analysis/pedigrees/Simulations/Create simulations/colony.simulations.generic.R
analysis/pedigrees/Simulations/Figure.png
analysis/pedigrees/Simulations/Linux colony runs/README.txt
analysis/pedigrees/Simulations/Linux colony runs/source.scripts/adj.ped.format.sh
analysis/pedigrees/Simulations/Linux colony runs/source.scripts/post.processing.R analysis/pedigrees/Simulations/Linux colony runs/source.scripts/summarize.conf.mat.R
analysis/pedigrees/Simulations/Linux colony runs/sub.colony
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar1000_nloci100_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar1000_nloci200_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar1000_nloci500_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar100_nloci100_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar100_nloci200_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar100_nloci500_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar10_nloci100_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar10_nloci200_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Input/npar10_nloci500_conf.mat.summary.txt
analysis/pedigrees/Simulations/Post Linux analysis/Output/accuracy.relationship.tiff
analysis/pedigrees/Simulations/Post Linux analysis/Output/false.negative.relationship.tiff
analysis/pedigrees/Simulations/Post Linux analysis/Output/family.sizes.tiff
analysis/pedigrees/Simulations/Post Linux analysis/Output/simulation.output.txt
analysis/pedigrees/Simulations/Post Linux analysis/summary.figures.both.R analysis/pedigrees/Simulations/README.md analysis/pedigrees/Simulations/README.pdf analysis/pedigrees/Simulations/README.rmd
compendiumOutline.png
data/SeaLampreyRapture.rda
extData/Lamprey_TargetDensity.txt
extData/Loci_Appendix_112918.txt
extData/R_OT.txt
extData/alf.dist.txt
extData/best.config.dck.age.1.txt
extData/best.config.dck.age.2.txt
extData/best.config.dck.age.3.txt
extData/best.config.scr.age.2.txt
extData/best.config.scr.age.3.txt
extData/compendiumOutline.pdf
extData/database_v2.txt
extData/indNames.csv
extData/lamprey_freebayes.targetloci.filtered.subsampled.vcf
extData/targets.chrpos
man/hello.Rd
tmp/data1temp.csv
ScribnerLab/SeaLampreyRapture documentation built on Jan. 10, 2020, 9:18 a.m.

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