Files in SiYangming/pRRophetic
Predict clinical chemotherapeutic response from before-treatment tumor gene expression levels.
.gitattributes
.gitignore
CITATION
DESCRIPTION
NAMESPACE
R.zip
R/classification_function.R
R/compute_phenotype_function.R
R/dependency_pacs.R
R/do_variable_selection.R
R/homogenize_data.R
R/predict_from_cgp.R
R/summarizeGenesByMean.R
README.md
build/vignette.rds
data/Cell_Lines_Details-1.csv
data/Cell_line_RMA_proc_basalExp.z01
data/Cell_line_RMA_proc_basalExp.z02
data/Cell_line_RMA_proc_basalExp.z03
data/Cell_line_RMA_proc_basalExp.z04
data/Cell_line_RMA_proc_basalExp.z05
data/Cell_line_RMA_proc_basalExp.zip
data/PANCANCER_IC_Tue Aug 9 15_28_57 2016.csv
data/PANCANCER_IC_Tue_Aug_9_15_28_57_2016.RData
data/bortezomibData.RData
data/ccleData.z01
data/ccleData.z02
data/ccleData.z03
data/ccleData.z04
data/ccleData.zip
data/cgp2016ExprRma.z01
data/cgp2016ExprRma.z02
data/cgp2016ExprRma.z03
data/cgp2016ExprRma.z04
data/cgp2016ExprRma.z05
data/cgp2016ExprRma.zip
data/datalist
data/drugAndPhenoCgp.RData
man/calcPhenotype.Rd
man/classifySamples.Rd
man/doVariableSelection.Rd
man/estimateCI.pRRopheticCv.Rd
man/estimateMeanPredictionError.pRRopheticCv.Rd
man/estimateMedianPredictionError.pRRopheticCv.Rd
man/estimateRsqr.pRRopheticCv.Rd
man/getCGPinfo.Rd
man/getPPV.Rd
man/homogenizeData.Rd
man/pRRopheticCV.Rd
man/pRRopheticLogisticPredict.Rd
man/pRRopheticPredict.Rd
man/pRRopheticQQplot.Rd
man/plot.pRRopheticCv.Rd
man/predictionAccuracyByCv.Rd
man/summarizeGenesByMean.Rd
man/summary.pRRopheticCv.Rd
pRRophetic.Rproj
vignettes/prepareData.R
vignettes/vignetteOutline-008.pdf
vignettes/vignetteOutline-011.pdf
vignettes/vignetteOutline-015.pdf
vignettes/vignetteOutline.Snw
