Man pages for Siliegia/SIGMA
A clusterability measure for scRNA-seq data
| fit_mp | Fit the Marchenko-Pastur distribution |
| get_info | Get informaton about each singular vectos |
| get_var_genes | Extract variance driving genes |
| out | Measure object created by applying sigma_funct |
| paga.coord | Force-directed graph layout |
| plot_all_g_sigmas | Plot all g-sigmas |
| plot_all_sigmas | Plot all sigmas |
| plot_MP | Plot fit of MP |
| plot_sigma | Plot sigma |
| plot_singular_vectors | Plot singular vectors for a cluster |
| rb.genes | List of ribosomal genes |
| sce_kidney | SingleCellObject of W16 fetal kidney |
| sigma_funct | Main function to calculate sigma |
| splatO | SingleCellObject generated from splatter |
| stress.genes | List of stress genes |
