API for Simon-Coetzee/motifBreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
| Global functions | |
|---|---|
| .get_cache | Source code |
| DNAmotifAlignment.2snp | Source code |
| addPWM.stack | Source code |
| biomartToGranges | Source code |
| cacheMartObj | Source code |
| cachePeakFile | Source code |
| calculatePvalue | Man page Source code |
| change.to.search.genome | Source code |
| convertPeakFile | Source code |
| determine.allele.from.ambiguous | Source code |
| encodemotif | Man page |
| example.results | Man page |
| exportMBbed | Man page Source code |
| exportMBtable | Man page Source code |
| factorbook | Man page |
| findSupportingRemapPeaks | Man page Source code |
| formatVcfOut | Source code |
| get_color_values | Source code |
| hocomoco | Man page |
| homer | Man page |
| loadMartObj | Source code |
| loadPeakFile | Source code |
| maxThresholdWindows | Source code |
| motifbreakR | Man page Source code |
| motifbreakR_motif | Man page |
| plotMB | Man page Source code |
| plotMotifLogoStack.3 | Source code |
| preparePWM | Source code |
| prepareVariants | Source code |
| reverseComplementMotif | Source code |
| scoreSeqWindows | Source code |
| scoreSnpList | Source code |
| selall | Source code |
| selcor | Source code |
| shiny_motifbreakR | Man page Source code |
| snps.from.file | Man page Source code |
| snps.from.rsid | Man page Source code |
| strSort | Source code |
| unlistColumn | Source code |
| updateResultsIndel | Source code |
| varEff | Source code |
| variants.from.file | Man page Source code |
