Files in Single-Cell-Academy/SCAP
Single Cell Analysis Portal

.Rbuildignore

.Rprofile

.dockerignore

.github/workflows/main.yml

.github/workflows/release_dockerhub_push.yml

.gitignore

DESCRIPTION

Dockerfile

NAMESPACE

Python/rank_genes_groups_df.py

R/._server.R R/._ui.R R/SCAP_functions.R R/SeuratToLoom.R

R/img/GenAP_powered_reg.png

R/renv.lock

R/run_app.R R/server.R R/server/cell_annotation.server.R R/server/compare_annotations.server.R R/server/custom_metadata.server.R R/server/differential_expression.server.R R/server/file_conversion.server.R R/server/main.server.R R/server/modalities.server.R R/server/scibet.server.R R/ui.R R/ui/cell_annotation.R R/ui/changelog.R R/ui/compare_annotations.R R/ui/custom_metadata.R R/ui/differential_expression.R R/ui/file_conversion.R R/ui/main.R R/ui/modalities.R R/ui/scibet.R

R/www/dotplot_celltype.png

R/www/dotplot_celltype_treatment.png

R/www/dotplot_treatment.png

README.md

SCAP.Rproj

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Bladder_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Bone_Marrow_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Heart_and_Aorta_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Limb_Muscle_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Liver_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Lung_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Pancreas_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Spleen_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Thymus_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Tongue_scibet_core.csv

SciBet_reference_datasets/GSE0_ALIGNED_Mus_musculus_Trachea_scibet_core.csv

SciBet_reference_datasets/GSE100428_scibet_core.csv

SciBet_reference_datasets/GSE100618_scibet_core.csv

SciBet_reference_datasets/GSE102580_scibet_core.csv

SciBet_reference_datasets/GSE102990_scibet_core.csv

SciBet_reference_datasets/GSE103334_scibet_core.csv

SciBet_reference_datasets/GSE103354_scibet_core.csv

SciBet_reference_datasets/GSE104225_scibet_core.csv

SciBet_reference_datasets/GSE106544_scibet_core.csv

SciBet_reference_datasets/GSE106960_scibet_core.csv

SciBet_reference_datasets/GSE106973_scibet_core.csv

SciBet_reference_datasets/GSE107585_scibet_core.csv

SciBet_reference_datasets/GSE109488_scibet_core.csv

SciBet_reference_datasets/GSE109774_Bladder_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Bladder_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Bone_Marrow_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Bone_Marrow_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Brain_Myeloid_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Brain_Non-Myeloid_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Diaphragm_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Fat_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Heart_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Heart_and_Aorta_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Kidney_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Kidney_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Large_Intestine_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Limb_Muscle_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Limb_Muscle_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Liver_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Lung_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Lung_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Mammary_Gland_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Mammary_Gland_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Pancreas_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Skin_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Spleen_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Spleen_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Thymus_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Thymus_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_Tongue_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Trachea_10x_scibet_core.csv

SciBet_reference_datasets/GSE109774_Trachea_Smart-seq2_scibet_core.csv

SciBet_reference_datasets/GSE109774_scibet_core.csv

SciBet_reference_datasets/GSE109796_scibet_core.csv

SciBet_reference_datasets/GSE109881_scibet_core.csv

SciBet_reference_datasets/GSE109990_scibet_core.csv

SciBet_reference_datasets/GSE110499_scibet_core.csv

SciBet_reference_datasets/GSE111727_scibet_core.csv

SciBet_reference_datasets/GSE111831_scibet_core.csv

SciBet_reference_datasets/GSE113197_scibet_core.csv

SciBet_reference_datasets/GSE115978_cancer_scibet_core.csv

SciBet_reference_datasets/GSE115978_normal_scibet_core.csv

SciBet_reference_datasets/GSE116237_scibet_core.csv

SciBet_reference_datasets/GSE118184_scibet_core.csv

SciBet_reference_datasets/GSE118852_scibet_core.csv

SciBet_reference_datasets/GSE120508_scibet_core.csv

SciBet_reference_datasets/GSE70580_scibet_core.csv

SciBet_reference_datasets/GSE72056_scibet_core.csv

SciBet_reference_datasets/GSE75688_scibet_core.csv

SciBet_reference_datasets/GSE81383_scibet_core.csv

SciBet_reference_datasets/GSE81547_scibet_core.csv

SciBet_reference_datasets/GSE81608_scibet_core.csv

SciBet_reference_datasets/GSE81682_scibet_core.csv

SciBet_reference_datasets/GSE81905_scibet_core.csv

SciBet_reference_datasets/GSE84133_scibet_core.csv

SciBet_reference_datasets/GSE84465_scibet_core.csv

SciBet_reference_datasets/GSE85241_scibet_core.csv

SciBet_reference_datasets/GSE86618_scibet_core.csv

SciBet_reference_datasets/GSE87375_scibet_core.csv

SciBet_reference_datasets/GSE87544_scibet_core.csv

SciBet_reference_datasets/GSE87631_scibet_core.csv

SciBet_reference_datasets/GSE89232_scibet_core.csv

SciBet_reference_datasets/GSE90848_scibet_core.csv

SciBet_reference_datasets/GSE92332-2_scibet_core.csv

SciBet_reference_datasets/GSE92332_scibet_core.csv

SciBet_reference_datasets/GSE93593_scibet_core.csv

SciBet_reference_datasets/GSE94820_scibet_core.csv

SciBet_reference_datasets/GSE98816_scibet_core.csv

SciBet_reference_datasets/GSE99058_scibet_core.csv

SciBet_reference_datasets/GSE99235_scibet_core.csv

SciBet_reference_datasets/GSE99795_scibet_core.csv

SciBet_reference_datasets/major_human_cell_types.csv

changelog/changelog.md man/SCAP.Rd man/server.Rd man/ui.Rd

meta/SciBet_reference_list.tsv

renv.lock

renv/.gitignore

renv/activate.R

renv/settings.dcf

requirements.txt

seurat.naming.conventions.txt

Single-Cell-Academy/SCAP documentation built on Dec. 28, 2021, 11:28 p.m.

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Single Cell Analysis Portal

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Single Cell Analysis Portal

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Single-Cell-Academy/SCAP Single Cell Analysis Portal

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Single-Cell-Academy/SCAP
Single Cell Analysis Portal

Files in Single-Cell-Academy/SCAP
Single Cell Analysis Portal