Files in SinomeM/QCtreeCNV
Reducing the visual inspection effort in CNV calling

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/QCtree.R R/computeCNVRs.R R/computeCNVRs_fast.R R/data.R R/extractMetrics.R R/extractRDS.R R/intenal.R R/plotCNVs.R R/qcplots.R R/qctree_pipeline.R R/read_tabix.R R/select_stitch_filter_calls.R README.md

data/hg18_chr_arms.rda

data/hg18_start_end_centromeres.rda

data/hg19_chr_arms.rda

data/hg19_start_end_centromeres.rda

data/hg38_chr_arms.rda

data/hg38_start_end_centromeres.rda

man/cnvr_fast.Rd man/cnvrs_create.Rd man/export_cnvs.Rd man/extractMetrics.Rd man/extractRDS.Rd man/get_region_tabix.Rd man/hg18_chr_arms.Rd man/hg18_start_end_centromeres.Rd man/hg19_chr_arms.Rd man/hg19_start_end_centromeres.Rd man/hg38_chr_arms.Rd man/hg38_start_end_centromeres.Rd man/qc_plots_cnvs.Rd man/qctree.Rd man/qctree_pre.Rd man/saveCNVplots.Rd man/select_stitch_calls.Rd tests/testthat.R tests/testthat/testQCtree.R tests/testthat/testextract.R tests/testthat/testinternals.R tmp/dev.R

vignettes/.gitignore

vignettes/CNVpipeline.png

vignettes/QC_tree.Rmd

vignettes/QCtree.png

vignettes/QCtreeCNV_pipeline.png

SinomeM/QCtreeCNV documentation built on Dec. 5, 2023, 4:06 p.m.

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